Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40060 188 / 5e-59 CLC2 clathrin light chain 2, Clathrin light chain protein (.1) AT3G51890 164 / 2e-49 Clathrin light chain protein (.1) AT2G20760 153 / 2e-44 Clathrin light chain protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004389 [exp] 404 / 3e-144 AT2G40060 220 / 9e-72 clathrin light chain 2, Clathrin light chain protein (.1) Lus10030401 [exp] 282 / 9e-96 AT2G40060 197 / 2e-62 clathrin light chain 2, Clathrin light chain protein (.1) Lus10011194 [exp] 166 / 2e-49 AT2G20760 235 / 2e-75 Clathrin light chain protein (.1) Lus10018480 [exp] 164 / 7e-49 AT2G20760 239 / 4e-77 Clathrin light chain protein (.1) Lus10018582 [exp] 133 / 9e-37 AT2G20760 195 / 2e-59 Clathrin light chain protein (.1) Lus10039815 [exp] 127 / 9e-35 AT2G20760 189 / 2e-57 Clathrin light chain protein (.1) Lus10037839 [exp] 0 / 1 AT2G40060 135 / 4e-42 clathrin light chain 2, Clathrin light chain protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G066800 [exp] 216 / 6e-70 AT2G40060 191 / 3e-60 clathrin light chain 2, Clathrin light chain protein (.1) Potri.010G190400 [exp] 211 / 3e-68 AT2G40060 215 / 1e-69 clathrin light chain 2, Clathrin light chain protein (.1) Potri.016G114700 [exp] 182 / 1e-56 AT2G40060 217 / 2e-70 clathrin light chain 2, Clathrin light chain protein (.1) Potri.019G102000 [exp] 156 / 3e-45 AT2G20760 212 / 2e-65 Clathrin light chain protein (.1) Potri.011G049500 [exp] 152 / 1e-44 AT2G20760 201 / 2e-62 Clathrin light chain protein (.1) Potri.004G040100 [exp] 150 / 2e-43 AT2G20760 216 / 7e-68 Clathrin light chain protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01086 [flax] [poplar] Clathrin_lg_ch Clathrin light chain
Representative CDS sequence Show only first row Show all	>Lus10040187 pacid=23173994 polypeptide=Lus10040187 locus=Lus10040187.g ID=Lus10040187.BGIv1.0 annot-version=v1.0 ATGTCCACGTTCGTTGACTCGTTCGACGACTCGGCAGTCCTCGAGGACGTAGACTCAGCTGGCCACTATGTAGGCTACAGTTCCGAACATTTCGTGGCAA ACGACGATGTTTTCATCTCGGAGCCTGTTCCGATCTACGGTGACGGCAGCGATTTCGCTGCGGCGGAGGAAGACAACGGGAGCGGCGGCTTTGATGGATC CGACGGTGCTGTTTTGCCTCCTCCGTCGCAGATGGAGGAGATTGGATTCGCTCTCAGAGAGTGGAGAAGAGAGAACGCGTTACGATTGGAGGAGAAGGAG AGGAAGGAAAGGGAGCTACTGAGCAAAATAATAGAGGAGGCGGAGGATTACAAGATAGAGTTCCATAAGAAGAGAGAGGTTACTTGTGAGAGCAACAAGG CAATCAACAGAGAAACGGAGAAGGTATTCGTGGCTAAGATAGAGAAGTTTCATGCCGAGGCTGACAAGGATTACTGGAAGTCAATAGCAGAGCTCATTCC TAATGAGGTGCTGACTATCGAAAAGAAGAGGAAAGCAAAGAAAGATCAGGAGAATAAGCCTTCCATTATGGTAGTCCAAGGTCCTAAACCTGGGAAACCA ACCGAGCTTTCGAGGATGCGACACATTCTCGTGCAACTGAAACACAATACACCATCTCACTTGAAGCTCGCCCCTCCAGCTCCTGTCAAGGATCCTAAAG CCACCAACCCGGCAGCAGCTACTACTTCCACCGATATGGCAATCCCGAAAGCTCCTGAGCCTCTAGCTGTTGCTTGA
AA sequence Show only first row Show all	>Lus10040187 pacid=23173994 polypeptide=Lus10040187 locus=Lus10040187.g ID=Lus10040187.BGIv1.0 annot-version=v1.0 MSTFVDSFDDSAVLEDVDSAGHYVGYSSEHFVANDDVFISEPVPIYGDGSDFAAAEEDNGSGGFDGSDGAVLPPPSQMEEIGFALREWRRENALRLEEKE RKERELLSKIIEEAEDYKIEFHKKREVTCESNKAINRETEKVFVAKIEKFHAEADKDYWKSIAELIPNEVLTIEKKRKAKKDQENKPSIMVVQGPKPGKP TELSRMRHILVQLKHNTPSHLKLAPPAPVKDPKATNPAAATTSTDMAIPKAPEPLAVA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40060		CLC2	clathrin light chain 2, Clathr...		Lus10040187 [exp]	0	1
AT2G40060		CLC2	clathrin light chain 2, Clathr...		Lus10004389 [exp]	1.0	0.8286
AT3G46010		ATADF1, ADF1	actin depolymerizing factor 1 ...		Lus10025319 [exp]	5.8	0.7754
AT3G54880			unknown protein		Lus10013824 [exp]	6.9	0.7198
AT2G18040		PIN1AT	"peptidylprolyl cis/trans isom...		Lus10025967 [exp]	8.5	0.7616
AT1G16890		UBC36 ,UBC13B	UBIQUITIN CONJUGATING ENZYME 1...		Lus10033611 [exp]	14.0	0.7328
AT2G17390		AKR2B	ankyrin repeat-containing 2B (...		Lus10026575 [exp]	14.7	0.7365
AT3G52560		MMZ4 ,UEV1D ,UE...	MMS2 ZWEI HOMOLOGUE 4, ubiquit...		Lus10029415 [exp]	15.1	0.7522
AT1G08450		AtCRT3, PSL1, E...	PRIORITY IN SWEET LIFE 1, EMS-...		Lus10020222 [exp]	18.1	0.6644
AT2G18040		PIN1AT	"peptidylprolyl cis/trans isom...		Lus10014266 [exp]	19.6	0.7325
AT5G13430			Ubiquinol-cytochrome C reducta...		Lus10012580 [exp]	22.9	0.7464

Compare expression of checked genes

Lus10040187 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.