Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40070 289 / 2e-90 unknown protein AT3G09000 173 / 2e-47 proline-rich family protein (.1) AT5G01280 116 / 8e-28 unknown protein AT2G38160 83 / 3e-17 unknown protein AT3G08670 56 / 8e-08 unknown protein AT1G27850 54 / 3e-07 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004390 [exp] 418 / 1e-144 AT2G40070 321 / 5e-107 unknown protein Lus10030402 [exp] 353 / 1e-114 AT2G40070 561 / 0.0 unknown protein Lus10037838 [exp] 348 / 2e-112 AT2G40070 551 / 0.0 unknown protein Lus10002493 [exp] 172 / 2e-47 AT2G40070 300 / 2e-95 unknown protein Lus10004824 [exp] 169 / 4e-46 AT3G09000 286 / 3e-90 proline-rich family protein (.1) Lus10027767 [exp] 120 / 3e-28 AT2G40070 288 / 5e-86 unknown protein Lus10035528 [exp] 107 / 4e-24 AT2G40070 280 / 4e-83 unknown protein Lus10021382 [exp] 74 / 2e-13 AT3G08670 432 / 4e-145 unknown protein Lus10025209 [exp] 71 / 1e-12 AT3G08670 398 / 6e-131 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G190300 [exp] 551 / 0 AT2G40070 368 / 6e-121 unknown protein Potri.008G066900 [exp] 340 / 5e-110 AT2G40070 321 / 1e-102 unknown protein Potri.016G114900 [exp] 202 / 2e-57 AT2G40070 352 / 7e-114 unknown protein Potri.016G139500 [exp] 69 / 5e-12 AT3G08670 245 / 2e-73 unknown protein Potri.010G177000 [exp] 65 / 4e-11 AT2G40070 82 / 9e-17 unknown protein Potri.008G178600 [exp] 65 / 1e-10 AT1G27850 567 / 0.0 unknown protein Potri.010G056200 [exp] 61 / 1e-09 AT1G27850 240 / 1e-64 unknown protein Potri.006G110700 [exp] 59 / 9e-09 AT3G08670 251 / 1e-75 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040188 pacid=23173859 polypeptide=Lus10040188 locus=Lus10040188.g ID=Lus10040188.BGIv1.0 annot-version=v1.0 ATGCAAGCGGCGGTAGCCAAACAGAGGCAGCAGTTGAGAGCCTCCATGATGAAGGACAAGGAAGAGGAACTTGCCTTGTTCTTGGAGATGAAGAAGGGCG AGAACGAGCTGCAGCAGCAACAGGAGTCTAATCTCCTTCTGCTCAATGAGAGTGCCGAATTTGATGCTCCGTTAGGTTCCAAGCCTGGCACGTCTCCGAT ATTCAACATCACGTCCTCAACTCCGGCGAGGAAAACCGGCGGCGATGATTTTCTCAATTCGGACAGTGATAAGAATGACTACGACTGGCTTATAACACCT CCTGGAACGCCCCTTTTCCCTTCCTTGGAGATGGAATCACAAAAGACCATCATGAGTCAGATTAGCACTCCAAAGGCTTGCCCCAATGTCCTCAAGTCTA GGCTAGCAACTAGCCAGAGAGAGAGCTTATCTGGTAGCAGCTTACCATCCAGACAATCAGCTTCATCTCCTGGGTTGAATTCTTCCAGTACTGGAGTTTG TAGGCCATCATCATCATCATCTAGTGGTCCTGGATCAAGGCTGGCAACACCAGCTGGACGCTCCCCATTGACAACAGCTTCTAAACCTTCAAGATCTTTG GCACCTACCTCCCGAGCTATCTTGTCTTTGTCTAAGCCCACAGTTTCTGCAACCAGGTCAAGTTCCTCATCTGCTAAGTCCATCGGTCCTCTAGCTAGAT CAACAACTTCAGCAGTGAAGCCTACAGTTACTGCAAGATCTTCAACACCAGTGAGATCAACAGCAAGACCTTCAACGCCAGTGAGATCTACAACAAGGCC TTCAACACCAACGACAAGACCTTCTATACCACCTCAATCCAAGTCTGCTTCAAGGCCAGCAACTCCAACTCGGAGGCCATCCACCCCATCTATGTCCGCA CCACCAACCAAATCTTCTCTTTCTAGTCCCAACTCAGCCCCCACGGTATCCAGACATCCAGTGCCATCACGTGGCTGTTCCCCGGCTCCCAAGTGGAGGT CATGGAAGCCCGCAGACATGCCCGGTTATTCGCTGGATGCGCCACCGAATTTAAGGACGTCATTACCTGACAGACCCGTTTCGGCTTCTCGAGGTAGGCC TGGAGCGCCGAGTTCTCGATCTTCCTCTATCCAGCCTGTCGTTTCGAATGGCAGAATAAGAAGACAATCGTGCTCCCCTTCAAGAGGACGCACCCCTAAT GGCAGCATCATACACAATAGTGGAAGCTCTGTCCCTGCGGTGAATCGTAAATCTAACGCTAGTGTCAATCCTGTAGTCATGGGGGCGAAAATGGTCGAAA GGGTGATAAATATGCGGAAACTAGCACCTCCAAGGCTAGATGAGAAACATTTACCGCATGGTAACTTGTCAGTCAAGTCTTATTCACCGGATAGTTCTGG GTTCGGAAGGACTCTGTCAAAGAAATCTCTGGATATGGCGATCAGGCACATGGATATAAGGCGAAGCATTCCTGGTAATCTACGGCCATTGATGACCAAC ATTCCAGGTTCCTCAATGTACAGTATTAGATCAGGCCCTGCACGAAGTCGAACCATCAGCGTTTCGGACTCGCCTCTCGCAACGAGCAGCAATGCTAGTT CGGAATTGAGTGTCAACAACAACGGAATTTCATTCGACAGAATCGAACTAGGGGATGAAATTGGCCTTGAAAGACATGGCCGTTCTCCGATTCGAGGTAG GTGA
AA sequence Show only first row Show all	>Lus10040188 pacid=23173859 polypeptide=Lus10040188 locus=Lus10040188.g ID=Lus10040188.BGIv1.0 annot-version=v1.0 MQAAVAKQRQQLRASMMKDKEEELALFLEMKKGENELQQQQESNLLLLNESAEFDAPLGSKPGTSPIFNITSSTPARKTGGDDFLNSDSDKNDYDWLITP PGTPLFPSLEMESQKTIMSQISTPKACPNVLKSRLATSQRESLSGSSLPSRQSASSPGLNSSSTGVCRPSSSSSSGPGSRLATPAGRSPLTTASKPSRSL APTSRAILSLSKPTVSATRSSSSSAKSIGPLARSTTSAVKPTVTARSSTPVRSTARPSTPVRSTTRPSTPTTRPSIPPQSKSASRPATPTRRPSTPSMSA PPTKSSLSSPNSAPTVSRHPVPSRGCSPAPKWRSWKPADMPGYSLDAPPNLRTSLPDRPVSASRGRPGAPSSRSSSIQPVVSNGRIRRQSCSPSRGRTPN GSIIHNSGSSVPAVNRKSNASVNPVVMGAKMVERVINMRKLAPPRLDEKHLPHGNLSVKSYSPDSSGFGRTLSKKSLDMAIRHMDIRRSIPGNLRPLMTN IPGSSMYSIRSGPARSRTISVSDSPLATSSNASSELSVNNNGISFDRIELGDEIGLERHGRSPIRGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40070			unknown protein		Lus10040188 [exp]	0	1
AT4G38430		ATROPGEF1, ROPG...	rho guanyl-nucleotide exchange...		Lus10025101 [exp]	6.5	0.8509
AT1G11790		AtADT1, ADT1	Arabidopsis thaliana arogenate...		Lus10015561 [exp]	8.2	0.8388
AT2G01130			DEA(D/H)-box RNA helicase fami...		Lus10007938 [exp]	9.4	0.8279
AT2G47230		ATDUF6	DOMAIN OF UNKNOWN FUNCTION 724...		Lus10010060 [exp]	9.5	0.8262
AT2G14520			CBS domain-containing protein ...		Lus10030665 [exp]	9.7	0.8306
AT1G14590			Nucleotide-diphospho-sugar tra...		Lus10019139 [exp]	10.3	0.8540
AT5G55280		ATFTSZ1-1, CPFT...	CHLOROPLAST FTSZ, ARABIDOPSIS ...		Lus10016579 [exp]	18.6	0.8429
AT2G20410			RNA-binding ASCH domain protei...		Lus10042558 [exp]	18.9	0.7834
AT1G45207			Remorin family protein (.2)		Lus10042649 [exp]	20.3	0.8306
AT5G55280		ATFTSZ1-1, CPFT...	CHLOROPLAST FTSZ, ARABIDOPSIS ...		Lus10002442 [exp]	21.0	0.8285

Compare expression of checked genes

Lus10040188 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.