Plant FIBer expression Database

Lus10040189 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G11240 531 / 0 ATATE2, ATE2 arginine-tRNA protein transferase 2 (.1)
AT5G05700 518 / 1e-177 ATATE1, DLS1, ATE1 DELAYED LEAF SENESCENCE 1, arginine-tRNA protein transferase 1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004392
[exp]
721 / 0 AT5G05700 434 / 3e-146 DELAYED LEAF SENESCENCE 1, arginine-tRNA protein transferase 1 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G190100
[exp]
676 / 0 AT5G05700 615 / 0.0 DELAYED LEAF SENESCENCE 1, arginine-tRNA protein transferase 1 (.1)
Potri.008G067000
[exp]
617 / 0 AT5G05700 551 / 0.0 DELAYED LEAF SENESCENCE 1, arginine-tRNA protein transferase 1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0257 Acetyltrans PF04377 ATE_C Arginine-tRNA-protein transferase, C terminus
CL0257 Acetyltrans PF04376 ATE_N Arginine-tRNA-protein transferase, N terminus
Representative CDS sequence
>Lus10040189 pacid=23174184 polypeptide=Lus10040189 locus=Lus10040189.g ID=Lus10040189.BGIv1.0 annot-version=v1.0
ATGGCAGGGAAGATGAGAGAAAAGGGGAAAAGGGAGCAAGCAGCAGACTGTGGAACAACAGCCAGCCGAAGCCGAGGAGAGACTGTCGTCGTTGATTGTG
GCAGGTGTAAGAGTTCTTGCGGTTACTGCAAGTCGTCAGGCAGCACCAGCATTTCTCACGGTCTCTGGGCACGCAGCATTACAGTTGATGACTATCAAGA
TCTTCTTGATCAGGGCTGGAGAAGATCTGGATGTTTCCTGTACAAACCAGAGATGGAAAGAACATGCTGTCCATCTTACACTATCCGCCTAAGGGCAAAT
GAATTTGTTCCCTCAAAGGAACAACAACGTGTCTTTAGAAGGTTGCAAAGGTTCTTAGATGGAACATTGGATGGGAACATATCAGTCGGGCTAGTACAGG
ATCCAACTACCTCTAACAAGAAATGCACGTGTTCCTTTCACAAAGTTTCAAGCTCAGGAGTGAAGGATTCCATTGCCGGTAAGAATGAAGAGAACAAAAG
ATCAGATGAAGCTGCCAGATATTTGTCAGAGCAACTTGACAATCTTGTTAGCAAGTGCACTGAAGATGGGGAACTTCCTTCTGGCATCACGCTACCGAAA
GCGTCGGTAAAAAAAGTTTCCCAGGGGAAAAGGAAGCTATTTGTTGAAGAGGGACAAGATCTCTTGTACTCTAGTAACATTGCATTTCAAATAGCATCTA
CTGTCAAGCGGGTGAAGTCGATGAATAAGGAGAAGCAAAGACTTGATCTTCAAGATGATGCCATAACTGCTAAAGTAATCGCAGAAAGGTTAGTTGCTTC
TGCTGCTCAGTTGGCTCAGAGAAACAGCCTGGCAGTGAGGGCTTGCAATGGCCATCTTAATTTTTATGGTGCTGCCTCACAATTGTCTTCTGAAAGCAAT
CAAGATTTCAGTGGCTCTGAAGAATCTGTTCGAGGATGTAAAAGAAAAAGTTGCTGTTCAAGGAAGAGTATTGATCAATTGCAGGGAAAGAAGAGGAAGC
TTGAGGTTAGGTTGAAAAGGTCTAGCTTTGATCCTGAAGAGTTTGCCTTGTATAGACGGTATCAGATACAAGTCCATAATGATGCACCAGATGAGGTATC
AGAAAGCTCATACAAGAGGTTTCTGGTTGATTCTCCTCTAGTGTTTGTTCCACCATCTGGTGATAACAGGGTTCCTCCTTGTGGGTTTGGTTCTTTCCAT
CAGCAATATGTAGTGGATGGTCATCTGATTGCCGTTGGAGTGGTTGATATCCTGCCAAGATGTTTGTCAAGTAAATATTTATTCTGGGATCCGGATTATG
CGTTCCTATCTTTAGGTAAGTACTCGGCCTCGCAGGAAATAAACTGGGTGAAAACGAATCAAGTACATTGCCCTAGTCTTGAACATTATTATCTCGGCTA
TTATATACATTCTTGCAACAAGATGAGATACAAAGCTGCATATCGCCCATCTGAACTGCTATGCCCTCTTCGTTACCAGTGGGTCCCCTTTGATATAGCA
AAGCCTTTGCTTGACAGAAAGCCCTACGTTGTCCTGTCAGATTATGCACTTATAGAAAATGGGGAGTCTTTGCCTCCTCATGTTGCAGAAAAAGACGCGG
AAGGCCAATATGATGATAATGTGACTGAAGACATGAATGATATTTATGTAGATGAGAATGAAGAAATGGTCGAACCTGAATCTGAAAGCTCAGATGATGA
TGATGATGAGATGGATCCTGAAATCATCAGTAATGGAGCGGTCGAACTAGAAGATGTGGATATTAACGACACTTTAATTGGATTGAAGGGTGCTCGTATG
AGGTACCAGGTAAGCTCCTGGATTCTGGTCATGATTTTCCCGGAATATTGCTCTGGACCAAAGGTTTCCTAG
AA sequence
>Lus10040189 pacid=23174184 polypeptide=Lus10040189 locus=Lus10040189.g ID=Lus10040189.BGIv1.0 annot-version=v1.0
MAGKMREKGKREQAADCGTTASRSRGETVVVDCGRCKSSCGYCKSSGSTSISHGLWARSITVDDYQDLLDQGWRRSGCFLYKPEMERTCCPSYTIRLRAN
EFVPSKEQQRVFRRLQRFLDGTLDGNISVGLVQDPTTSNKKCTCSFHKVSSSGVKDSIAGKNEENKRSDEAARYLSEQLDNLVSKCTEDGELPSGITLPK
ASVKKVSQGKRKLFVEEGQDLLYSSNIAFQIASTVKRVKSMNKEKQRLDLQDDAITAKVIAERLVASAAQLAQRNSLAVRACNGHLNFYGAASQLSSESN
QDFSGSEESVRGCKRKSCCSRKSIDQLQGKKRKLEVRLKRSSFDPEEFALYRRYQIQVHNDAPDEVSESSYKRFLVDSPLVFVPPSGDNRVPPCGFGSFH
QQYVVDGHLIAVGVVDILPRCLSSKYLFWDPDYAFLSLGKYSASQEINWVKTNQVHCPSLEHYYLGYYIHSCNKMRYKAAYRPSELLCPLRYQWVPFDIA
KPLLDRKPYVVLSDYALIENGESLPPHVAEKDAEGQYDDNVTEDMNDIYVDENEEMVEPESESSDDDDDEMDPEIISNGAVELEDVDINDTLIGLKGARM
RYQVSSWILVMIFPEYCSGPKVS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G11240 ATATE2, ATE2 arginine-tRNA protein transfer... Lus10040189
[exp]
0 1
AT3G58750 CSY2 citrate synthase 2 (.1) Lus10031384
[exp]
2.2 0.8451
AT1G76900 TUB AtTLP1 tubby like protein 1 (.1.2) Lus10029780
[exp]
4.5 0.8181
AT2G03890 UBDKGAMMA7, ATP... UBIQUITIN-LIKE DOMAIN KINASE G... Lus10036834
[exp]
9.2 0.7963
AT1G35470 SPla/RYanodine receptor (SPRY)... Lus10009451
[exp]
13.4 0.7596
AT5G03540 ATEXO70A1 exocyst subunit exo70 family p... Lus10043432
[exp]
13.7 0.7977
AT5G20350 TIP1 TIP GROWTH DEFECTIVE 1, Ankyri... Lus10008037
[exp]
16.6 0.8373
AT5G20350 TIP1 TIP GROWTH DEFECTIVE 1, Ankyri... Lus10038108
[exp]
17.6 0.8379
AT5G52410 unknown protein Lus10038854
[exp]
19.5 0.7846
AT4G35830 ACO1 aconitase 1 (.1.2) Lus10028405
[exp]
23.0 0.7597
AT1G54920 unknown protein Lus10004472
[exp]
24.7 0.8176

Lus10040189 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.