Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40100 407 / 1e-144 LHCB4.3 light harvesting complex photosystem II (.1.2) AT3G08940 356 / 1e-124 LHCB4.2 light harvesting complex photosystem II (.1.2) AT5G01530 355 / 4e-124 LHCB4.1 light harvesting complex photosystem II (.1) AT3G54890 137 / 2e-39 LHCA1 photosystem I light harvesting complex gene 1 (.1.2.3.4) AT1G15820 104 / 1e-26 CP24, LHCB6 light harvesting complex photosystem II subunit 6 (.1) AT3G61470 102 / 1e-25 LHCA2 photosystem I light harvesting complex gene 2 (.1) AT4G10340 99 / 3e-24 LHCB5 light harvesting complex of photosystem II 5 (.1) AT1G29920 98 / 4e-24 AB165, LHCB1.1, CAB2 LIGHT HARVESTING CHLOROPHYLL A/B-BINDING PROTEIN 1.1, chlorophyll A/B-binding protein 2 (.1) AT1G29910 98 / 4e-24 AB180, LHCB1.2, CAB3 LIGHT HARVESTING CHLOROPHYLL A/B BINDING PROTEIN 1.2, chlorophyll A/B binding protein 3 (.1) AT1G29930 98 / 4e-24 LHCB1.3, CAB140, CAB1 LIGHT-HARVESTING CHLOROPHYLL A/B-PROTEIN 1.3, CHLOROPHYLL A/B PROTEIN 140, chlorophyll A/B binding protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028299 [exp] 483 / 1e-174 AT2G40100 412 / 7e-147 light harvesting complex photosystem II (.1.2) Lus10037836 [exp] 399 / 3e-141 AT2G40100 399 / 2e-141 light harvesting complex photosystem II (.1.2) Lus10035512 [exp] 370 / 8e-130 AT3G08940 459 / 4e-165 light harvesting complex photosystem II (.1.2) Lus10027786 [exp] 189 / 2e-59 AT3G08940 263 / 2e-88 light harvesting complex photosystem II (.1.2) Lus10040391 [exp] 139 / 8e-40 AT3G54890 371 / 1e-131 photosystem I light harvesting complex gene 1 (.1.2.3.4) Lus10023509 [exp] 138 / 2e-39 AT3G54890 367 / 3e-130 photosystem I light harvesting complex gene 1 (.1.2.3.4) Lus10011361 [exp] 102 / 1e-25 AT3G61470 414 / 6e-148 photosystem I light harvesting complex gene 2 (.1) Lus10006416 [exp] 102 / 2e-25 AT3G61470 404 / 6e-144 photosystem I light harvesting complex gene 2 (.1) Lus10030403 [exp] 97 / 6e-25 AT2G40100 102 / 1e-28 light harvesting complex photosystem II (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G067300 [exp] 410 / 3e-146 AT2G40100 420 / 7e-150 light harvesting complex photosystem II (.1.2) Potri.006G099500 [exp] 357 / 4e-125 AT3G08940 474 / 7e-171 light harvesting complex photosystem II (.1.2) Potri.016G115200 [exp] 357 / 7e-125 AT3G08940 449 / 4e-161 light harvesting complex photosystem II (.1.2) Potri.008G041000 [exp] 133 / 1e-37 AT3G54890 395 / 4e-141 photosystem I light harvesting complex gene 1 (.1.2.3.4) Potri.010G221100 [exp] 125 / 8e-35 AT3G54890 392 / 4e-140 photosystem I light harvesting complex gene 1 (.1.2.3.4) Potri.006G139600 [exp] 105 / 8e-27 AT1G19150 393 / 1e-139 photosystem I light harvesting complex gene 6 (.1) Potri.003G171500 [exp] 101 / 2e-25 AT3G61470 409 / 5e-146 photosystem I light harvesting complex gene 2 (.1) Potri.001G210000 [exp] 100 / 3e-25 AT1G15820 424 / 7e-152 light harvesting complex photosystem II subunit 6 (.1) Potri.003G020400 [exp] 100 / 6e-25 AT1G15820 421 / 9e-151 light harvesting complex photosystem II subunit 6 (.1) Potri.001G056700 [exp] 100 / 8e-25 AT3G61470 410 / 3e-146 photosystem I light harvesting complex gene 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00504 [flax] [poplar] Chloroa_b-bind Chlorophyll A-B binding protein
Representative CDS sequence Show only first row Show all	>Lus10040191 pacid=23173855 polypeptide=Lus10040191 locus=Lus10040191.g ID=Lus10040191.BGIv1.0 annot-version=v1.0 ATGATGGCTACCACCGCATCCGCCGCCACTGTAGCGACCCGGTTCATCGGCCCCCAGACCCGAAGAAGATCTGACCTCCAGAAAGTCCAGGCCCGGTTCG GATTCAGCTTAGGCAAGAAGAAGCCGGCCCCGAAGCCCAAGAAGGCAGCCGTGCCAGCTGGCGAAAGGCTGGTTTGGTTCCCCAAAGCCAGCCCGCCCGA ATGGCTCGACGGCACGATGGTCGGTGACCGCGGGTTCGACCCGCTGGGTCTTGCTAAACCGGCTGAGTACCTGCAGTATGACTTCGACTCGCTGGATCAG AACCTGGCCAAGAATCTGGCAGGGGAGATCATCGGGGTGAGGACGGAAACTGCTGAGGTTAAACCGACGCCGTTTCAGCCGTACGATGAGGTGTTTGGGA TCCAGCGGTTTAGGGAGTGTGAGGTCATCCACGGGAGGTGGGCCATGTTGGGTACTCTTGGAGCCCTCGCTGTCGAGGGGCTCACCGGCGTCGCCTGGCA GGATGCCGGCAAGGTGGAGCTGGTTGAAGGAGCGTCGTACCTAGGGCAGCCGCTGCCGTTCTCGTTGACAACTCTGATATGGATAGAGGTGCTGGTGATC GGGTTCATTGAGTTCCAGCGAAATGCAGAGCTCGACCCGGAGAAGCGGCTCTACCCGGGTGGGTATTTCGACCCGCTGGGTCTGGCGTCGGACCCGGAGA AGAAGGAAAGCCTCCAGCTGGCGGAGATAAAGCACTCGAGGCTGGCCATGGTGGCATTCCTCATCTTTGGCATCCAGGCTGCTTATACGGGCAAAGGTCC CATCAGCTTTGTGGCTACCTTCGGCCAGTAA
AA sequence Show only first row Show all	>Lus10040191 pacid=23173855 polypeptide=Lus10040191 locus=Lus10040191.g ID=Lus10040191.BGIv1.0 annot-version=v1.0 MMATTASAATVATRFIGPQTRRRSDLQKVQARFGFSLGKKKPAPKPKKAAVPAGERLVWFPKASPPEWLDGTMVGDRGFDPLGLAKPAEYLQYDFDSLDQ NLAKNLAGEIIGVRTETAEVKPTPFQPYDEVFGIQRFRECEVIHGRWAMLGTLGALAVEGLTGVAWQDAGKVELVEGASYLGQPLPFSLTTLIWIEVLVI GFIEFQRNAELDPEKRLYPGGYFDPLGLASDPEKKESLQLAEIKHSRLAMVAFLIFGIQAAYTGKGPISFVATFGQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40100		LHCB4.3	light harvesting complex photo...		Lus10040191 [exp]	0	1
AT4G39480		CYP96A9	"cytochrome P450, family 96, s...		Lus10018161 [exp]	1.4	0.9467
AT5G42760			Leucine carboxyl methyltransfe...		Lus10000713 [exp]	1.7	0.9410
AT1G18265			Protein of unknown function, D...		Lus10035638 [exp]	3.0	0.9327
AT1G47480			alpha/beta-Hydrolases superfam...		Lus10019884 [exp]	3.2	0.9386
AT5G20190			Tetratricopeptide repeat (TPR)...		Lus10002166 [exp]	3.3	0.9317
AT4G32260		PDE334	PIGMENT DEFECTIVE 334, ATPase,...		Lus10041039 [exp]	5.1	0.9455
AT2G33855			unknown protein		Lus10013983 [exp]	7.1	0.9323
AT2G36145			unknown protein		Lus10014224 [exp]	7.5	0.9258
AT4G09650		PDE332, ATPD	PIGMENT DEFECTIVE 332, ATP syn...		Lus10020508 [exp]	7.7	0.9396
AT2G39730		RCA	rubisco activase (.1.2.3)		Lus10000518 [exp]	8.5	0.9376

Compare expression of checked genes

Lus10040191 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.