Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20696 124 / 8e-37 NFD3, NFD03, HMGB3 high mobility group B3 (.1.2.3) AT1G20693 119 / 1e-34 HMGBETA1, NFD2, NFD02, HMGB2 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3) AT3G51880 117 / 1e-33 AtHMGB1, NFD1, HMGB1 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) AT2G17560 97 / 3e-26 NFD4, NFD04, HMGB4 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D4, high mobility group B4 (.1.2.3) AT4G35570 87 / 5e-22 NFD5, NFD05, HMGD, HMGB5 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR 5, high mobility group B5 (.1) AT2G34450 77 / 6e-18 HMG-box (high mobility group) DNA-binding family protein (.1), HMG-box (high mobility group) DNA-binding family protein (.2) AT5G23420 74 / 4e-16 HMGB6 high-mobility group box 6 (.1.2) AT4G23800 60 / 1e-10 3xHMG-box2, AT4G23800 3xHigh Mobility Group-box2, HMG (high mobility group) box protein (.1), HMG (high mobility group) box protein (.2) AT4G11080 56 / 2e-09 3xHMG-box1 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) AT3G28730 47 / 3e-06 NFD, SSRP1, ATHMG NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D, high mobility group (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028298 [exp] 219 / 5e-73 AT3G51880 134 / 6e-40 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) Lus10035511 [exp] 123 / 5e-35 AT3G51880 152 / 2e-46 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) Lus10030738 [exp] 114 / 5e-32 AT1G20693 185 / 7e-61 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3) Lus10012250 [exp] 117 / 1e-31 AT1G20696 189 / 3e-59 high mobility group B3 (.1.2.3) Lus10012252 [exp] 109 / 5e-31 AT1G20693 164 / 1e-53 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3) Lus10016025 [exp] 109 / 1e-30 AT1G20693 192 / 7e-64 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3) Lus10027787 [exp] 89 / 2e-22 AT3G51880 132 / 2e-39 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) Lus10035991 [exp] 87 / 6e-22 AT1G20693 117 / 8e-35 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3) Lus10016695 [exp] 87 / 2e-21 AT1G20693 121 / 2e-35 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G189900 [exp] 141 / 9e-43 AT3G51880 129 / 3e-38 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) Potri.008G067400 [exp] 135 / 2e-40 AT3G51880 100 / 4e-27 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) Potri.005G101400 [exp] 128 / 4e-38 AT1G20696 112 / 2e-32 high mobility group B3 (.1.2.3) Potri.005G252600 [exp] 125 / 8e-37 AT1G20696 147 / 7e-46 high mobility group B3 (.1.2.3) Potri.002G009000 [exp] 121 / 2e-35 AT1G20696 146 / 8e-46 high mobility group B3 (.1.2.3) Potri.007G000900 [exp] 81 / 5e-19 AT5G23420 156 / 8e-48 high-mobility group box 6 (.1.2) Potri.004G131400 [exp] 69 / 7e-15 AT2G34450 132 / 6e-40 HMG-box (high mobility group) DNA-binding family protein (.1), HMG-box (high mobility group) DNA-binding family protein (.2) Potri.001G093700 [exp] 58 / 5e-10 AT4G11080 325 / 2e-106 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) Potri.003G138000 [exp] 57 / 8e-10 AT4G11080 302 / 1e-97 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) Potri.004G091800 [exp] 41 / 0.0002 AT5G37930 81 / 4e-16 Protein with RING/U-box and TRAF-like domains (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0114 [flax] [poplar] HMG-box PF00505 [flax] [poplar] HMG_box HMG (high mobility group) box
Representative CDS sequence Show only first row Show all	>Lus10040192 pacid=23174130 polypeptide=Lus10040192 locus=Lus10040192.g ID=Lus10040192.BGIv1.0 annot-version=v1.0 ATGAAATTGTCAAGAGGCAGGGGAAACAAAGACCAGAAGAAGGAAGCAATCCTGGACCCTGTGGACGACAGGAGAGTTGGGAAAAGGAAGGCAGTAGTGG GGAAAGTATCAGAGAGCAGCAGTAACAGCAAGAAGAAGATGGGGACTCAATGTTCAGCAGCAGCAGCCAAGGATCCCAACAAACCAAAGCGACCCGCTAC TGCTTTTTTTGTCTTTCTAGAAGAGTTCAGAAAGGTTTACAAACAACAACATCCAAATAATAAAGCTGTCTCCGCTGTGGGGAAAGCTGGAGGGGAGAAG TGGAAATCTTTGTCTAGTGCAGAGAAAGCTCCTTACGAATCCAAGGCAGCGAACAGGAAATCGGAATACGAAAATCTTGTCAAGGCCTATAACAAGAAAC AGGAAACCATAAACCACGGCCACGAAGAAGATGATGATGATGATGATGAAGATGCGATTCGGAAATCGAAGAAATCTAAAGCTAATGGGGCCAAGATTGA TGATGAGGAGGACTCCGAGGAAGAGGAAGATGGTGATGATGATGAGGATGATTGA
AA sequence Show only first row Show all	>Lus10040192 pacid=23174130 polypeptide=Lus10040192 locus=Lus10040192.g ID=Lus10040192.BGIv1.0 annot-version=v1.0 MKLSRGRGNKDQKKEAILDPVDDRRVGKRKAVVGKVSESSSNSKKKMGTQCSAAAAKDPNKPKRPATAFFVFLEEFRKVYKQQHPNNKAVSAVGKAGGEK WKSLSSAEKAPYESKAANRKSEYENLVKAYNKKQETINHGHEEDDDDDDEDAIRKSKKSKANGAKIDDEEDSEEEEDGDDDEDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51880		AtHMGB1, NFD1, ...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10040192 [exp]	0	1
AT3G52070			unknown protein		Lus10029504 [exp]	3.2	0.8908
					Lus10024153 [exp]	4.5	0.8506
AT5G23240			DNAJ heat shock N-terminal dom...		Lus10022246 [exp]	6.2	0.8566
					Lus10012544 [exp]	7.3	0.8598
AT3G51880		AtHMGB1, NFD1, ...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10028298 [exp]	8.3	0.8169
AT5G40270			HD domain-containing metal-dep...		Lus10029160 [exp]	11.5	0.8320
AT5G59610			Chaperone DnaJ-domain superfam...		Lus10040777 [exp]	11.5	0.8481
AT5G11330			FAD/NAD(P)-binding oxidoreduct...		Lus10008089 [exp]	11.6	0.8118
AT5G06690		WCRKC1	WCRKC thioredoxin 1 (.1.2)		Lus10021067 [exp]	12.0	0.8401
AT2G02390		GST18, ATGSTZ1	GLUTATHIONE S-TRANSFERASE 18, ...		Lus10005367 [exp]	12.2	0.8349

Compare expression of checked genes

Lus10040192 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.