Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05690 630 / 0 CBB3, DWF3, CYP90A1, CYP90A, CPD DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) AT4G36380 321 / 3e-104 ROT3 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) AT3G13730 316 / 9e-103 CYP90D1 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1) AT3G50660 313 / 4e-101 PSC1, CYP90B1, CLM, SNP2, DWF4, SAV1 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) AT1G73340 258 / 4e-80 Cytochrome P450 superfamily protein (.1) AT1G12740 251 / 6e-78 CYP87A2 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) AT3G30180 247 / 2e-76 CYP85A2, BR6OX2 brassinosteroid-6-oxidase 2 (.1) AT4G19230 246 / 5e-76 CYP707A1 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) AT5G45340 241 / 5e-74 CYP707A3 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) AT5G38970 238 / 8e-73 ATBR6OX, CYP85A1, BR6OX1 brassinosteroid-6-oxidase 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014850 [exp] 648 / 0 AT5G05690 679 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Lus10028297 [exp] 558 / 0 AT5G05690 472 / 2e-168 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Lus10030404 [exp] 507 / 1e-179 AT5G05690 531 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Lus10028345 [exp] 313 / 1e-101 AT4G36380 652 / 0.0 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) Lus10041794 [exp] 306 / 6e-99 AT4G36380 643 / 0.0 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) Lus10016065 [exp] 288 / 1e-91 AT3G50660 399 / 3e-134 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Lus10024016 [exp] 274 / 5e-87 AT3G50660 643 / 0.0 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Lus10005075 [exp] 257 / 2e-80 AT5G38970 644 / 0.0 brassinosteroid-6-oxidase 1 (.1.2.3) Lus10034377 [exp] 255 / 5e-80 AT5G38970 648 / 0.0 brassinosteroid-6-oxidase 1 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G189800 [exp] 673 / 0 AT5G05690 717 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Potri.008G067500 [exp] 656 / 0 AT5G05690 710 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Potri.001G200100 [exp] 343 / 2e-113 AT3G13730 663 / 0.0 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1) Potri.003G038200 [exp] 338 / 1e-111 AT3G13730 662 / 0.0 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1) Potri.007G018400 [exp] 323 / 2e-105 AT4G36380 626 / 0.0 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) Potri.005G124000 [exp] 321 / 7e-105 AT3G50660 738 / 0.0 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Potri.007G026500 [exp] 321 / 9e-105 AT3G50660 757 / 0.0 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Potri.014G171700 [exp] 284 / 1e-90 AT3G50660 408 / 1e-138 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Potri.003G122500 [exp] 273 / 2e-86 AT1G12740 770 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.001G109100 [exp] 269 / 1e-84 AT1G12740 770 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10040193 pacid=23174023 polypeptide=Lus10040193 locus=Lus10040193.g ID=Lus10040193.BGIv1.0 annot-version=v1.0 ATGATCACCACCGACGAATATCTCTTCATCTCCCTCCTCCTCTGCCTCCTCTCCTTCTTCCTCCTCCGCCGCCGGTACGACGACAATGGCGGCCGCCCCC CCCCGGGGGGGCAGGGCCGCCCCCTTGGGAGTCAGGGACTCCCCTTGATTGGGGAGACCCTGCAGCTGATCTCTGCATACAAGACGGAGGACCCCGAGCC ATTCATCGACGAGCGGGTCGACCGGTTTGGACCGGTCTTCACCACCCACGTGTTCGGGGAGCCGACCATTTTCTCGGCCGACCCGGAGGTGAACCGGATG ATACTCCAGACGGAAGGGAAGTTCGTCGACGTCAGCTACCCCGGTTCGATCTCGAACCTGCTGGGGAAGCATTCGCTGCTGCTCATGAAAGGTGTGGTCC ACAAGAGGATGCATTCTTTGACGATGAGCTTCTCAAACCCTTCCATATTGAAGGATCACCTTCTGTTTGATATTGACCGGTTGGTCCGGTTGAACCTCGA GTTGTGGTCCGACCGTGTGTTACTCATGGAAGAGGCCAAGAAGATAACGTTTGAGTTAGCGATGAAACAGTTGATAAGTTTGGATCCATGCGAATGGACA GAAAAGCTAAGGAGGGAATACGTGCTTGTGATCGAGGGATTTTTCACCCTCCCTTTCCCTCTCTTCTCCACCACTTACCGCCGAGCCATCCAAGCGAGGA CGAAGGTGGCGGAGGCCTTGACCTTGGTGGTGAGGGAGAGGAGGAAAGAGATGGAATTAGATGTAGAGAAGAAGAAAAGAAACGACATTTTGGCTGCCCT TGTGGCTGCCGACGAGGGGTTGTCGGACGATGAGGTAGTGGATTTCTTGGTGGCTATGCTGGTGGCCGGGTATGAAACGACGTCGACTAGCATGACCCTC GCCGTTAAGTTCCTTACCGACACTCCTATGGCTTTGGCTCAGCTCCGGGAGGAGCATCACGAAATCAGGAAGAGGAAGAGGGAAGGAGAAGCCCTGGACT GGATTGATTACAAAGCGATGCCGTTTACTCAATGTGTCGTCAACGAGACCTTGAGAGTAGGCAACATAATTAGCGGGGTGTTTAGGCGAGCAATTACCGA CATCCCTGTCAAAGGGTACACAATTCCGAAAGGGTGGAAGGTGTTTGTCTCCTTCCGAGCTGTGCATATGGACCAGGATCACTTCAAAGATGCCCGAACT TTTAACCCTTGGAGATGGCAGAACAATTCAGGGGCAATAACAAGTGCTGGGAATGTGTTCACACCATTTGGAGGAGGGGGTCGGCTCTGCCCGGGTTACG AACTAGCCAGAGTCGAACTCTCCGTGTTCCTTCACCATTTAGTAAATGGTTTCAGTTGGGAACCGGCTGAGAAAGATAAGGTAGTGTTCTTTCCGACCAC GCGGACCCAGAAGCGATACCCTATCAATGTCAGGCGTCGAGATCAGATCTGA
AA sequence Show only first row Show all	>Lus10040193 pacid=23174023 polypeptide=Lus10040193 locus=Lus10040193.g ID=Lus10040193.BGIv1.0 annot-version=v1.0 MITTDEYLFISLLLCLLSFFLLRRRYDDNGGRPPPGGQGRPLGSQGLPLIGETLQLISAYKTEDPEPFIDERVDRFGPVFTTHVFGEPTIFSADPEVNRM ILQTEGKFVDVSYPGSISNLLGKHSLLLMKGVVHKRMHSLTMSFSNPSILKDHLLFDIDRLVRLNLELWSDRVLLMEEAKKITFELAMKQLISLDPCEWT EKLRREYVLVIEGFFTLPFPLFSTTYRRAIQARTKVAEALTLVVRERRKEMELDVEKKKRNDILAALVAADEGLSDDEVVDFLVAMLVAGYETTSTSMTL AVKFLTDTPMALAQLREEHHEIRKRKREGEALDWIDYKAMPFTQCVVNETLRVGNIISGVFRRAITDIPVKGYTIPKGWKVFVSFRAVHMDQDHFKDART FNPWRWQNNSGAITSAGNVFTPFGGGGRLCPGYELARVELSVFLHHLVNGFSWEPAEKDKVVFFPTTRTQKRYPINVRRRDQI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05690		CBB3, DWF3, CYP...	DWARF 3, CYTOCHROME P450 90A1,...		Lus10040193 [exp]	0	1
AT3G26610			Pectin lyase-like superfamily ...		Lus10029121 [exp]	8.0	0.7541
AT1G73390			Endosomal targeting BRO1-like ...		Lus10031313 [exp]	28.1	0.7644
AT2G43330		ATINT1	inositol transporter 1 (.1)		Lus10043119 [exp]	63.1	0.7295
AT5G49950			alpha/beta-Hydrolases superfam...		Lus10037325 [exp]	116.2	0.7247
AT1G36050			Endoplasmic reticulum vesicle ...		Lus10036449 [exp]	233.3	0.6757

Compare expression of checked genes

Lus10040193 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.