Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05680 968 / 0 EMB2789, MOS7 MODIFIER OF SNC1,7, EMBRYO DEFECTIVE 2789, nuclear pore complex protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028296 [exp] 1536 / 0 AT5G05680 1013 / 0.0 MODIFIER OF SNC1,7, EMBRYO DEFECTIVE 2789, nuclear pore complex protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G189700 [exp] 1108 / 0 AT5G05680 1021 / 0.0 MODIFIER OF SNC1,7, EMBRYO DEFECTIVE 2789, nuclear pore complex protein-related (.1) Potri.008G067600 [exp] 1098 / 0 AT5G05680 997 / 0.0 MODIFIER OF SNC1,7, EMBRYO DEFECTIVE 2789, nuclear pore complex protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10168 [flax] [poplar] Nup88 Nuclear pore component
Representative CDS sequence Show only first row Show all	>Lus10040194 pacid=23173958 polypeptide=Lus10040194 locus=Lus10040194.g ID=Lus10040194.BGIv1.0 annot-version=v1.0 ATGAGGTTCAAATTAGACATCGACGACGACGCCGGCTCGCCGGATTCTTCTTGTCGGCGGACACCGACACCAAAGGAGGAAGTGAAGTGGCTTCCGCTCC AGAAGCATCCGGTATTCACTTCTTCGAGCTCCGCCTCGTCCGATGGAGCTCCAGCGGATGTTCTAGCTCCGCGGAACCTTCTCGCGTGGGACGGTGCCTC CAGGCTGTATTACTGGGATTCACGCGATAAGTGCCTCCACCGAGTTTCTATAAAACTAGGCGAACCGGAACCTGAGTCTGTGCTCGCCGCTTCTCCGTCT AAGGCGTTGCTAGCGGATGTGCAGATTGACTTCGTGGTTAACAAAATCTCCATTAACAGAAACGGATCAGCTATGCTTCTTGCTGGTTTGGATGGTATTT GCTTGATGTATCTTTATGGACGCAGTTCTGCTAGTGCTAATGCCATTATCTGCAGGACTTTTACAGTCGGTTCCCAACTGTATTCTGATGAAAGCAACAC AATCCGAACTCTACAGGTTTCTTGGCACCCTTACAGTGAGGCACATATAGGAGTTCTTTCATCTGATTCAGTTTTCAGAATCTTCAATTTGTCTTCGGAT TTCTTGCAACCAGAGCAGGAGTATTATCTACAGCCTCTGCAACCTGGTGGATCCAGAAACGCCGCTTGCATGTCTGCTGTTGATTTTTCTTTTGGCGGAG ACCACCTGTGGGACAGGTTTTCTGTATTTGTATTGTTCAGTGATGGTTCTATTTACCTTCTCTGCCCTGTTGTTCCCTTCGGGAGTGTCTACAAATGGGA CTCAGTTTTGGAGATATATAATGATGCCAACACACTGGGGTTGGAGTCATCTAATCCAATTGCTGTTAGCAATTCTAGTCGAGCAATCTCTTGGTTAGAA GCTACATTTTTTGAGTTAACTTCTGAAGAAGCAGACAAAGAAAACTTAGCTGCTGTCAAAGCTCATGCCCATGTTTTGTTCGATGCATCACTCTGCTTGC AGGGACCTCTTCAGAGAATTCAGAGAAATAAGGACGATGGAGACTTGGCCGTGTCCAGTAGAGGGAGTCAAGGGCGTGCGGTTGGTTTTCTCTACAATCT AGTCAGCAAAGACTCCGTTCTTGTTACTGCCTGGAGCAGTGGCCAGTTACAAATAGATGCATTGGCTGATGAAATCCAGCCAGTCTGGACTGCTGGTAGT GCACCTCGGCTCCGTGTCAATTCACATGACCAAGTTCTTGGTCTTGCCATGATATGTGAATCAATTCCACATGAACTCCCTGTTATGACGCTTGATCAAC CACTTGATCATACTGTTTGGCTGGGCCACCCGCCGCCTTTGTTAAGACTTGCAATTGTGGATCTGTCCTTGACACAGGAAAGAGAAAGCGGCTGCCATAT TGTTATGTTTGCGGATCCCCTCATGCCTGAAAAAATTTATTGTCTTCATGAAGGTGGGGTGGACTCGATATTGTTACATTTTCTCCCATTTACTAATCAA TCTAGTGGAAAGGATGAAACTGTCAGGGCTCCATCTGTGCGTCCTGTCCTGAGTACATGCCAGGCAAAGAGTGCAACTGTATCTCCACTTTGTGGTTTCG TTGCGCTCTCTGATTCATTTGGATACTCATGGATTGTGGGAATCACGGCTGCTCAAGAATGCGTTGTGCTTGAGATGAAAACATGGAATTTTATACTTCC TCTACAAATTGATAAGGACCATGCAAACAGTGAGGAGTTGAAGGAGGCGAATGCTCCGGACATCATAAGCAAAGAATTACTTGCTGGTCCCAAGGTGGTA CCTGTCCCTCAAGTGTCGCCAAACTTTCGTTCAGTTTCTGCCGACTCTATAGAAGGCCGGTCAATGCTTCATCAGTACTTCAAGCTTTTCCATGAAAATT ATGTTGAATATGCCCATAAGGTTTACTTTGAGCTGAAGCATCATGGACCACAGTTGAAGAGGATCATTACTGACCAACAGGCTCGTCTCAAGGATGCTCA TGAGAAACTTGTGAAAGTAAAGGAGAAACAGGCAGGTTTAGAGGATAGGATCGAGCATGCAGTTCATCAGCACAATCTTCTGGAACAGCGTTTGCAACAC TTGAGGAATCTGCCTGGAGTTCACAAGAAACCTTTATCTAGAGCAGAGCGGAAGTTCAAGTCCGAACTAGACCAACTTACCGGAGTTGAGTTAGACACAT TACATATGTCTATCGAGACTCTGAGAGCTAGGCAGAGAAGGTATGCGGCACGGGCTTCAAGAGACAGCATCTCTAATCAGCAAAGGAAGATAGCAGGGAG GAACCATGTTCTGGATTCCCAAATCTCCCAATTAAAATCTTCGCTTGCTAAACTTTCACTCGTTAATGCCGAGAACTCAAAGAAAGTTAAGATTGTAGAA ACTGGTTTGAAAGCTCAGGAGCGGGGAGTTCTACGCGGCTAG
AA sequence Show only first row Show all	>Lus10040194 pacid=23173958 polypeptide=Lus10040194 locus=Lus10040194.g ID=Lus10040194.BGIv1.0 annot-version=v1.0 MRFKLDIDDDAGSPDSSCRRTPTPKEEVKWLPLQKHPVFTSSSSASSDGAPADVLAPRNLLAWDGASRLYYWDSRDKCLHRVSIKLGEPEPESVLAASPS KALLADVQIDFVVNKISINRNGSAMLLAGLDGICLMYLYGRSSASANAIICRTFTVGSQLYSDESNTIRTLQVSWHPYSEAHIGVLSSDSVFRIFNLSSD FLQPEQEYYLQPLQPGGSRNAACMSAVDFSFGGDHLWDRFSVFVLFSDGSIYLLCPVVPFGSVYKWDSVLEIYNDANTLGLESSNPIAVSNSSRAISWLE ATFFELTSEEADKENLAAVKAHAHVLFDASLCLQGPLQRIQRNKDDGDLAVSSRGSQGRAVGFLYNLVSKDSVLVTAWSSGQLQIDALADEIQPVWTAGS APRLRVNSHDQVLGLAMICESIPHELPVMTLDQPLDHTVWLGHPPPLLRLAIVDLSLTQERESGCHIVMFADPLMPEKIYCLHEGGVDSILLHFLPFTNQ SSGKDETVRAPSVRPVLSTCQAKSATVSPLCGFVALSDSFGYSWIVGITAAQECVVLEMKTWNFILPLQIDKDHANSEELKEANAPDIISKELLAGPKVV PVPQVSPNFRSVSADSIEGRSMLHQYFKLFHENYVEYAHKVYFELKHHGPQLKRIITDQQARLKDAHEKLVKVKEKQAGLEDRIEHAVHQHNLLEQRLQH LRNLPGVHKKPLSRAERKFKSELDQLTGVELDTLHMSIETLRARQRRYAARASRDSISNQQRKIAGRNHVLDSQISQLKSSLAKLSLVNAENSKKVKIVE TGLKAQERGVLRG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05680		EMB2789, MOS7	MODIFIER OF SNC1,7, EMBRYO DEF...		Lus10040194 [exp]	0	1
AT5G61990			Pentatricopeptide repeat (PPR)...		Lus10036020 [exp]	2.8	0.9380
AT5G05240			Uncharacterised conserved prot...		Lus10029030 [exp]	4.2	0.9113
AT2G32730			26S proteasome regulatory comp...		Lus10016681 [exp]	4.7	0.9317
AT4G40000			S-adenosyl-L-methionine-depend...		Lus10026840 [exp]	6.7	0.9287
AT4G36360		BGAL3	beta-galactosidase 3 (.1.2)		Lus10025980 [exp]	6.9	0.9154
AT5G18230			transcription regulator NOT2/N...		Lus10020262 [exp]	9.2	0.9045
AT3G07140			GPI transamidase component Gpi...		Lus10025918 [exp]	9.8	0.9017
AT3G04610		FLK	flowering locus KH domain, RNA...		Lus10000120 [exp]	10.7	0.8968
AT2G06510		ATRPA70A, ATRPA...	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10033436 [exp]	11.6	0.9116
AT2G18510		EMB2444	embryo defective 2444, RNA-bin...		Lus10024024 [exp]	13.7	0.9075

Compare expression of checked genes

Lus10040194 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.