Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40095 205 / 6e-67 Alpha/beta hydrolase related protein (.1) AT3G55880 196 / 2e-63 SUE4 sulphate utilization efficiency 4, Alpha/beta hydrolase related protein (.1.2) AT1G80280 107 / 1e-26 alpha/beta-Hydrolases superfamily protein (.1) AT1G52750 93 / 1e-21 alpha/beta-Hydrolases superfamily protein (.1) AT1G15490 85 / 1e-18 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028294 [exp] 310 / 5e-108 AT2G40095 262 / 1e-89 Alpha/beta hydrolase related protein (.1) Lus10014849 [exp] 269 / 6e-92 AT2G40095 212 / 8e-70 Alpha/beta hydrolase related protein (.1) Lus10030405 [exp] 268 / 1e-91 AT2G40095 220 / 3e-73 Alpha/beta hydrolase related protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G067700 [exp] 251 / 5e-85 AT2G40095 229 / 1e-76 Alpha/beta hydrolase related protein (.1) Potri.010G189600 [exp] 236 / 4e-79 AT2G40095 207 / 6e-68 Alpha/beta hydrolase related protein (.1) Potri.003G059400 [exp] 117 / 5e-30 AT1G15490 845 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G174900 [exp] 112 / 3e-28 AT1G80280 828 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040195 pacid=23174032 polypeptide=Lus10040195 locus=Lus10040195.g ID=Lus10040195.BGIv1.0 annot-version=v1.0 ATGGGGTTCACCAAGGAGGAGAAATCCAAGAGAGTTCTCAGAGGAGTCAAGACGGTGTTCTTCATCATCACTATGATCTTCTCCTTCCTCATCTTCTCAG CTCCGGTCCTCTTCGTCATCGCCGACGCTCTGCTCCCGGTGTCCCTCCTCTCCGCTTCGTTATCGCCTTCTTCTTTGTCTGCTCACAGTCTGTTCGCCGA CCTCGGAAACTTCGATTTCCGCTACTCCCTCGTCGACATCCCCCTCATTTCCATCCTCAGATCCGCTGTCATCTTCTGTGTCTACAGCTTCTGCGACGGG CCGAGGCTGTCCAGAGGGCCGTACTTGGGGATTACGGCGATCTGCTCCGTCTCGTCGTTGATTTACGTTTCTGCAAAGGCGCCGTACGTTTTCAGCGTTT ACAGGATCGATCGGGGAGGATACGTGCGAGGGATGGAGATTGCTCTGTTTATCTGCTCGCTGTTGCTGGCGATCGGGCATGTAGTTGTGGCGTACCGTAC AAGCTGTAGAGAGAGGAGGAAGCTTCTGGTTTACAAAATTGACATTGAAGCTTGGGATAATCCGTTGCATGGTTGTCTTCTCCATCAGCTCCCGAATCTC GCTCGCAGCAGCAGAGTGTTTGGTAAACTACCTCCTGTCGGCGATATCAAATCAAACACATATCGAGAGTCGAGCGTCACCGGTCCAAACCGCGACAGTT GA
AA sequence Show only first row Show all	>Lus10040195 pacid=23174032 polypeptide=Lus10040195 locus=Lus10040195.g ID=Lus10040195.BGIv1.0 annot-version=v1.0 MGFTKEEKSKRVLRGVKTVFFIITMIFSFLIFSAPVLFVIADALLPVSLLSASLSPSSLSAHSLFADLGNFDFRYSLVDIPLISILRSAVIFCVYSFCDG PRLSRGPYLGITAICSVSSLIYVSAKAPYVFSVYRIDRGGYVRGMEIALFICSLLLAIGHVVVAYRTSCRERRKLLVYKIDIEAWDNPLHGCLLHQLPNL ARSSRVFGKLPPVGDIKSNTYRESSVTGPNRDS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40095			Alpha/beta hydrolase related p...		Lus10040195 [exp]	0	1
AT1G14130			2-oxoglutarate (2OG) and Fe(II...		Lus10031054 [exp]	1.0	0.9037
AT3G51830		ATG5, SAC8	SAC domain-containing protein ...		Lus10025267 [exp]	10.4	0.8853
AT1G34320			Protein of unknown function (D...		Lus10017136 [exp]	15.5	0.8866
AT5G59590		UGT76E2	UDP-glucosyl transferase 76E2 ...		Lus10040725 [exp]	16.0	0.8277
					Lus10033269 [exp]	24.0	0.8906
AT1G07650			Leucine-rich repeat transmembr...		Lus10031374 [exp]	28.8	0.8521
AT2G31870		PARG1, TEJ	Sanskrit for 'bright', poly\(A...		Lus10020902 [exp]	29.2	0.8890
AT4G27290			S-locus lectin protein kinase ...		Lus10038554 [exp]	31.5	0.8802
AT3G24090			glutamine-fructose-6-phosphate...		Lus10020198 [exp]	32.4	0.8793
AT1G72890			Disease resistance protein (TI...		Lus10006929 [exp]	33.5	0.8891

Compare expression of checked genes

Lus10040195 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.