Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40090 666 / 0 ATATH9 ABC2 homolog 9 (.1) AT1G65950 184 / 4e-51 Protein kinase superfamily protein (.1) AT5G64940 100 / 7e-22 ATATH13, ATOSA1 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) AT3G07700 97 / 8e-21 Protein kinase superfamily protein (.1.2.3) AT5G24810 94 / 9e-20 ABC1 family protein (.1.2) AT4G24810 86 / 2e-17 Protein kinase superfamily protein (.1.2.3) AT5G50330 81 / 6e-16 Protein kinase superfamily protein (.1.2) AT1G71810 81 / 7e-16 Protein kinase superfamily protein (.1) AT1G79600 81 / 1e-15 Protein kinase superfamily protein (.1) AT5G24970 72 / 5e-13 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028292 [exp] 847 / 0 AT2G40090 842 / 0.0 ABC2 homolog 9 (.1) Lus10006363 [exp] 102 / 1e-22 AT3G07700 1066 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10012317 [exp] 101 / 4e-22 AT3G07700 1051 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10036636 [exp] 99 / 2e-21 AT5G64940 1087 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Lus10026970 [exp] 97 / 6e-21 AT5G24810 1368 / 0.0 ABC1 family protein (.1.2) Lus10026971 [exp] 97 / 1e-20 AT5G24810 1038 / 0.0 ABC1 family protein (.1.2) Lus10020168 [exp] 94 / 7e-20 AT5G24810 1358 / 0.0 ABC1 family protein (.1.2) Lus10035853 [exp] 91 / 6e-19 AT5G64940 1046 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Lus10035701 [exp] 81 / 2e-15 AT1G79600 1034 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G067900 [exp] 706 / 0 AT2G40090 823 / 0.0 ABC2 homolog 9 (.1) Potri.004G075100 [exp] 201 / 5e-57 AT1G65950 660 / 0.0 Protein kinase superfamily protein (.1) Potri.007G082500 [exp] 102 / 8e-23 AT5G64940 1081 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Potri.018G003400 [exp] 101 / 3e-22 AT5G24810 1250 / 0.0 ABC1 family protein (.1.2) Potri.006G276600 [exp] 101 / 4e-22 AT5G24810 1253 / 0.0 ABC1 family protein (.1.2) Potri.005G083200 [exp] 100 / 6e-22 AT5G64940 1068 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Potri.018G003600 [exp] 98 / 3e-21 AT5G24810 956 / 0.0 ABC1 family protein (.1.2) Potri.014G168600 [exp] 92 / 3e-19 AT3G07700 1038 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.015G091000 [exp] 79 / 2e-15 AT5G50330 752 / 0.0 Protein kinase superfamily protein (.1.2) Potri.002G061000 [exp] 79 / 3e-15 AT1G71810 915 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF03109 [flax] [poplar] ABC1 ABC1 family
Representative CDS sequence Show only first row Show all	>Lus10040196 pacid=23173928 polypeptide=Lus10040196 locus=Lus10040196.g ID=Lus10040196.BGIv1.0 annot-version=v1.0 ATGGCGGCCCGATTTCTGTGGCGAACCCAGGCGAAGCTCGCGGTAGCATCTACCGCACTTGTCTCCGGCGGAGCCGCGGCGGCAATTGCTACTTCCGATG ATCCCGCCACTGCGCTCAAGGTTTGCACCACTGTTCCCCTTCGCCTTGTCCGTGACTCCGTAACTGCCGCCTCCATCGCTTTCGATTATGAGTACTCCTT GTTGGGATTGCCGGAAGGAAGTGATGAGAGGGTGAAAGTTAAGCATGAAGTTCACCTTAGGTCCGCCCGTAAGCTTCAGGAACTATTCTTCAGAAATGGA GGCATATATATCAAGCTCGGTCAACACATTGGACAGCTGATCTTTAGCGAGTTTGATCCTGTACCAATAGCTAGTGCTTCTCTTGCACAAGTTCATGTTG CTCGTACATCTGATGGCCAAAAAGTGGCTGTTAAGGTTCAACATACTCACATGACAGACACAGCTGCTGCAGATCATGCTACGGTGGATATTATTGTGAA TGCCCTACACTGGATGTTTCCTTCATTTGATTACAGATGGTTGCTTGATGAAATGCGTGAAAGTTTGCCCAAGGCAAGTACCCTTCTTTCTTCCTTATTC TTGGATTTTTGTCTCCTAGTGCCAGAACTGGATTTCTTAACTGAAGCAAAGAACAGTGAGAGATGTTTGGAGAACTTCTGGAAGTTATCTCCCCGTATAG CAGATTTTGTCTATGCACCAAGGGTCTACTGGAACCTAAGCACTTCAAAGTTATTAACAATGGAGTTCATTGATGGTGCACATGTGAATGATATCAAGAC GATTCAGAAACTTGGACTCCAGCCTAAGGAAGTTTCAACTTTAGTTAGTCAAGTATTTGCTGAGATGATGTTTAAACATGGGTTTGTGCATTGTGATCCC CATGCAGCCAACTTGATAGTTCGGCCATTGCCTTCTAGTGGAAGGAACTTTCTGGGCAAGAGAAAACCACAGTTGGTACTCTTAGACCATGGCCTATACA AAGAACTTGATTTCTCTACGAGGTTCAATTATGCATCCCTTTGGAAGGCACTAGTATTTGCTGATGTGAAGTCGATAAAGGAAAATTGTGTTAAGCTCGG TGCTGGAGAAGATCTATATGCACTCTTTGCTGGTATCCTTACCATGAGGCCCTGGAATCGGGTCATCGACCCAGCCGTTGATCATTTAGTGATAAGAGGC AATGCCGATGAACGCTCAGAACTACAGATGTATGCCTCTCAGTATTTCCCTCAAATCTCAGAGCTTCTAAGGAGACTTCCACGCGAAATTTTGCTGCTGC TGAAGACCAATGACTGCTTAAGAGCAGTGAATAATTCTCTGTTGCAAGGTTCTTCCCTCGAATTGTTCTTCATCATTGGCAAACTATCGTCCGAGGCGGT CATCGAGGCAAAGAAGTCGCAGAGGAAATCCGTCCTAGCATGGTTCGGCATTTGGTTTGATCAACTGCGCCTTGAAGTTCGACTTCTAGGGATGAAGGTG GCACTGTGGCTCTTCCAACTCCGCAGAGCTTTACCCGGGTGTAGTAAGACACCGTCCCTAGCAGGGTTACTATGCCGCTCAGCTAGGTGTACTGTTTTCA CTGGACGCGGACTGTTATTTGGAGACTTCCTCCGATTCAACTCTGCTCTAAAGTGGTGA
AA sequence Show only first row Show all	>Lus10040196 pacid=23173928 polypeptide=Lus10040196 locus=Lus10040196.g ID=Lus10040196.BGIv1.0 annot-version=v1.0 MAARFLWRTQAKLAVASTALVSGGAAAAIATSDDPATALKVCTTVPLRLVRDSVTAASIAFDYEYSLLGLPEGSDERVKVKHEVHLRSARKLQELFFRNG GIYIKLGQHIGQLIFSEFDPVPIASASLAQVHVARTSDGQKVAVKVQHTHMTDTAAADHATVDIIVNALHWMFPSFDYRWLLDEMRESLPKASTLLSSLF LDFCLLVPELDFLTEAKNSERCLENFWKLSPRIADFVYAPRVYWNLSTSKLLTMEFIDGAHVNDIKTIQKLGLQPKEVSTLVSQVFAEMMFKHGFVHCDP HAANLIVRPLPSSGRNFLGKRKPQLVLLDHGLYKELDFSTRFNYASLWKALVFADVKSIKENCVKLGAGEDLYALFAGILTMRPWNRVIDPAVDHLVIRG NADERSELQMYASQYFPQISELLRRLPREILLLLKTNDCLRAVNNSLLQGSSLELFFIIGKLSSEAVIEAKKSQRKSVLAWFGIWFDQLRLEVRLLGMKV ALWLFQLRRALPGCSKTPSLAGLLCRSARCTVFTGRGLLFGDFLRFNSALKW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40090		ATATH9	ABC2 homolog 9 (.1)		Lus10040196 [exp]	0	1
AT1G24340		EMB260, EMB2421	EMBRYO DEFECTIVE 260, EMBRYO D...		Lus10011372 [exp]	1.7	0.9100
AT4G26910			Dihydrolipoamide succinyltrans...		Lus10032632 [exp]	2.8	0.9215
AT3G44370			Membrane insertion protein, Ox...		Lus10026414 [exp]	3.5	0.8880
AT5G67020			unknown protein		Lus10019249 [exp]	6.7	0.8916
AT4G26300		EMB1027	embryo defective 1027, Arginyl...		Lus10034982 [exp]	8.1	0.9031
AT2G36305		RCE1, ATFACE2, ...	RAS-CONVERTING ENZYME 1, ARABI...		Lus10022724 [exp]	8.1	0.8875
AT1G78690			Phospholipid/glycerol acyltran...		Lus10004783 [exp]	10.7	0.8800
AT2G40190		LEW3	LEAF WILTING 3, UDP-Glycosyltr...		Lus10007500 [exp]	13.0	0.8581
AT4G26900		HISN4, HISHF, A...	HIS HF (.1)		Lus10043113 [exp]	16.1	0.9130
AT4G26910			Dihydrolipoamide succinyltrans...		Lus10032633 [exp]	18.1	0.9095

Compare expression of checked genes

Lus10040196 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.