Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11210 402 / 5e-143 SGNH hydrolase-type esterase superfamily protein (.1) AT2G38180 281 / 7e-95 SGNH hydrolase-type esterase superfamily protein (.1) AT5G62930 173 / 3e-53 SGNH hydrolase-type esterase superfamily protein (.1) AT5G45920 159 / 1e-47 SGNH hydrolase-type esterase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028290 [exp] 549 / 0 AT3G11210 402 / 2e-143 SGNH hydrolase-type esterase superfamily protein (.1) Lus10004815 [exp] 315 / 9e-109 AT3G11210 323 / 3e-112 SGNH hydrolase-type esterase superfamily protein (.1) Lus10035506 [exp] 240 / 3e-77 AT3G11210 244 / 7e-79 SGNH hydrolase-type esterase superfamily protein (.1) Lus10027790 [exp] 184 / 3e-56 AT2G38180 194 / 1e-59 SGNH hydrolase-type esterase superfamily protein (.1) Lus10027675 [exp] 169 / 9e-52 AT5G62930 414 / 2e-148 SGNH hydrolase-type esterase superfamily protein (.1) Lus10000525 [exp] 153 / 2e-45 AT5G45920 337 / 4e-118 SGNH hydrolase-type esterase superfamily protein (.1) Lus10013941 [exp] 103 / 9e-27 AT5G45920 257 / 1e-87 SGNH hydrolase-type esterase superfamily protein (.1) Lus10027793 [exp] 84 / 3e-20 AT3G11210 78 / 1e-18 SGNH hydrolase-type esterase superfamily protein (.1) Lus10039938 [exp] 67 / 4e-14 AT5G62930 180 / 1e-58 SGNH hydrolase-type esterase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G068000 [exp] 410 / 2e-146 AT3G11210 419 / 5e-150 SGNH hydrolase-type esterase superfamily protein (.1) Potri.010G189300 [exp] 405 / 1e-144 AT3G11210 414 / 4e-148 SGNH hydrolase-type esterase superfamily protein (.1) Potri.006G100300 [exp] 337 / 2e-117 AT3G11210 327 / 8e-114 SGNH hydrolase-type esterase superfamily protein (.1) Potri.016G116100 [exp] 321 / 4e-111 AT3G11210 337 / 9e-118 SGNH hydrolase-type esterase superfamily protein (.1) Potri.016G115800 [exp] 296 / 1e-101 AT3G11210 307 / 4e-106 SGNH hydrolase-type esterase superfamily protein (.1) Potri.016G116000 [exp] 296 / 2e-101 AT3G11210 306 / 1e-105 SGNH hydrolase-type esterase superfamily protein (.1) Potri.012G081900 [exp] 173 / 3e-53 AT5G62930 403 / 3e-144 SGNH hydrolase-type esterase superfamily protein (.1) Potri.004G053800 [exp] 163 / 2e-49 AT5G45920 329 / 3e-115 SGNH hydrolase-type esterase superfamily protein (.1) Potri.011G063800 [exp] 150 / 3e-44 AT5G45920 357 / 6e-126 SGNH hydrolase-type esterase superfamily protein (.1) Potri.016G115900 [exp] 59 / 3e-11 AT3G11210 58 / 2e-11 SGNH hydrolase-type esterase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10040197 pacid=23174061 polypeptide=Lus10040197 locus=Lus10040197.g ID=Lus10040197.BGIv1.0 annot-version=v1.0 ATGGTGGGGCCGTCCAGGCCGCAGATCGTCCTTTTCGGATCCTCCATCGTACAGCTCAGCTTCGGCAATGGCGGTTGGGGTTCCACTCTCTCCGAAATCT ATGCTCGCAGAGCAGATGTGATCTTACGAGGATACTACGGATGGAACTCTCGCCGTGCCCTCCAAGTGCTCGATAAAATTTTCCCCAAGGTATGCATCTA TGGAACTCTCGTTGTGCCGTCCAAGCGTTTTGAGCTTGGAGATGCTGCGGAACAGCCATCTTTGGTGATTGTGTATTTTGGTGGAAATGATTCAATGGGA GCACACTCTTCTGGATTAGGCCCTCATGTTCCACTTCCTGAGTATGTAGACAACATGAAGAAGATCGGCCTTCATCTCAAGAGCCTTTCGGAATCAACGC GAGTGATTTTCCTTAGTAGTCCTCTGGTTGATGAGGAGCGAGTTCGCTCAAACACCAGTGAATACTTTAGCGAACTAGTTAGGACCAATGAGCTCTGTGG GGAGTACTCAGAAGCGTGTATAAAGCTGTGCAAGGAGCTGGACTTGAAAGTTGTCGACCTTTTCTCTGCAATTCAAACTAGAAGCGACTGGACTACTGCA TGCTTTACGGATGGGATTCACTTAGCAGCAGAAGGAAGCAAAATAGTGGTGAGGGAGATACTGAAGGTGCTAAGGGAAGCAGAATGGAGTCCGTCGTTGC ACTGGAAACAAATGCCGATTGAATTCTCAGAAGATTCGCCTTATGATCTTGTTGCTGCGGACGGCAGAAGGACTCTAAATCCATCCACTTGGAATTTCCA CTGGGAGACTAAGTGGGATTAG
AA sequence Show only first row Show all	>Lus10040197 pacid=23174061 polypeptide=Lus10040197 locus=Lus10040197.g ID=Lus10040197.BGIv1.0 annot-version=v1.0 MVGPSRPQIVLFGSSIVQLSFGNGGWGSTLSEIYARRADVILRGYYGWNSRRALQVLDKIFPKVCIYGTLVVPSKRFELGDAAEQPSLVIVYFGGNDSMG AHSSGLGPHVPLPEYVDNMKKIGLHLKSLSESTRVIFLSSPLVDEERVRSNTSEYFSELVRTNELCGEYSEACIKLCKELDLKVVDLFSAIQTRSDWTTA CFTDGIHLAAEGSKIVVREILKVLREAEWSPSLHWKQMPIEFSEDSPYDLVAADGRRTLNPSTWNFHWETKWD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11210			SGNH hydrolase-type esterase s...		Lus10040197 [exp]	0	1
AT2G40435			unknown protein		Lus10010217 [exp]	76.8	0.6533
AT1G27940		ABCB13, PGP13	ATP-binding cassette B13, P-gl...		Lus10017271 [exp]	77.0	0.6416
AT2G07050		CAS1	cycloartenol synthase 1 (.1)		Lus10014538 [exp]	101.2	0.6400
AT1G28340		AtRLP4	receptor like protein 4 (.1)		Lus10015320 [exp]	118.8	0.6283
AT2G32580			Protein of unknown function (D...		Lus10029975 [exp]	123.3	0.6294
AT1G25570			Di-glucose binding protein wit...		Lus10034275 [exp]	139.5	0.6214
AT5G53500			Transducin/WD40 repeat-like su...		Lus10017902 [exp]	161.8	0.6207
AT5G02430			Transducin/WD40 repeat-like su...		Lus10000387 [exp]	176.2	0.6140
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Lus10021795 [exp]	215.0	0.5885

Compare expression of checked genes

Lus10040197 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.