Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65165 391 / 1e-137 SDH2-3 succinate dehydrogenase 2-3 (.1) AT3G27380 301 / 1e-102 SDH2-1 succinate dehydrogenase 2-1 (.1.2) AT5G40650 301 / 2e-102 SDH2-2 succinate dehydrogenase 2-2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028289 [exp] 590 / 0 AT5G65165 435 / 1e-154 succinate dehydrogenase 2-3 (.1) Lus10022319 [exp] 297 / 6e-101 AT5G40650 469 / 5e-169 succinate dehydrogenase 2-2 (.1) Lus10014879 [exp] 297 / 7e-101 AT5G40650 467 / 2e-168 succinate dehydrogenase 2-2 (.1) Lus10032113 [exp] 297 / 9e-101 AT5G40650 467 / 3e-168 succinate dehydrogenase 2-2 (.1) Lus10014573 [exp] 296 / 1e-100 AT5G40650 469 / 5e-169 succinate dehydrogenase 2-2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G338400 [exp] 296 / 1e-100 AT5G40650 444 / 4e-159 succinate dehydrogenase 2-2 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040198 pacid=23174145 polypeptide=Lus10040198 locus=Lus10040198.g ID=Lus10040198.BGIv1.0 annot-version=v1.0 ATGAAGAAGAGCAGCGGAAGCTGGCTGCGGCAAGGCTACAACAAACTCGCCACCGCCATCGGCGGGAAAGAAAAGCCGCCGGTAGCAGCAAAGCAACAGA ATTTTCCAATCCTGGAAGGCAACCCGATCGGCCAAGAACACGCTCAACAATCCGTCCACACATTCGACGCCGTCAAGAATACAAAGCATCATCATCAGCC TCTCCTAAAGGAATTCAAAATCTACAGATGGAACCCCGACGTCCCCACTGGAAAGCCGTACCTCCAGTCTTTCCAAGTGGACCTCAACGACTGCGGGCCC ATGGTGCTCGACGCGCTGCAGAAGATAAAAGCAGAGGTGGAGCCCGGGTTGAGTTACAGGAGGTCGTGTAGAGAAGGGATATGCGGTTCGTGTGCTATGA ACATCGATGGAACGAACACGGTGGCTTGTTTGAAACCGATTGATCCGGACTTGTCGAAGCCGCTGTTCGTCACTCCTCTGCCTCATATGTTTGTGATCAA GGATCTCGTTGTTGATCTCACCAACTTCTACCAACAATACAAGCAGTCGCCTGAAGACAGGAAGAAGCTGGATGGGTTGTACGAGTGCATATTGTGCGCA TGCTGCAGTACAGCGTGCCCATCTTACTGGTGGAACCCTGAAGTGTTTCTTGGACCTGCACCTTTGCTTCATGCTTACCGTTGGATATGCGACAGCCGGG ATGAGTATACAGAGGAGAGGTTGCAAGCGTTGACTGAGGAGACGAAGAAATTGTACAGGTGTCGGGTTATTAAGAACTGCACTGCCACGTGTCCCAAGAG TTTGAATCCTGCTGATGCCATTCATAAGATGAAGACCAAGCATTTGGCATCTGTTCCTGTGGAGGAGTCTGAGAGCAAGAAGAACTATCAAGCCTGTTGA
AA sequence Show only first row Show all	>Lus10040198 pacid=23174145 polypeptide=Lus10040198 locus=Lus10040198.g ID=Lus10040198.BGIv1.0 annot-version=v1.0 MKKSSGSWLRQGYNKLATAIGGKEKPPVAAKQQNFPILEGNPIGQEHAQQSVHTFDAVKNTKHHHQPLLKEFKIYRWNPDVPTGKPYLQSFQVDLNDCGP MVLDALQKIKAEVEPGLSYRRSCREGICGSCAMNIDGTNTVACLKPIDPDLSKPLFVTPLPHMFVIKDLVVDLTNFYQQYKQSPEDRKKLDGLYECILCA CCSTACPSYWWNPEVFLGPAPLLHAYRWICDSRDEYTEERLQALTEETKKLYRCRVIKNCTATCPKSLNPADAIHKMKTKHLASVPVEESESKKNYQAC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65165		SDH2-3	succinate dehydrogenase 2-3 (....		Lus10040198 [exp]	0	1
AT5G22450			unknown protein		Lus10000530 [exp]	4.9	1.0000
AT4G17220		ATMAP70-5	microtubule-associated protein...		Lus10003908 [exp]	6.9	1.0000
					Lus10011425 [exp]	9.5	1.0000
AT3G02100			UDP-Glycosyltransferase superf...		Lus10015750 [exp]	9.8	1.0000
AT4G13090		XTH2	xyloglucan endotransglucosylas...		Lus10032879 [exp]	12.0	1.0000
AT5G14180		MPL1	Myzus persicae-induced lipase ...		Lus10031524 [exp]	12.2	1.0000
					Lus10007184 [exp]	13.0	1.0000
					Lus10007226 [exp]	13.9	1.0000
AT2G28605			Photosystem II reaction center...		Lus10009159 [exp]	14.7	1.0000
AT4G05120		FUR1, ENT3, FLU...	FUDR RESISTANT 1, EQUILIBRATIV...		Lus10018414 [exp]	16.2	1.0000

Compare expression of checked genes

Lus10040198 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.