Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08510 788 / 0 ATPLC2 phospholipase C 2 (.1.2.3) AT3G55940 762 / 0 Phosphoinositide-specific phospholipase C family protein (.1) AT2G40116 676 / 0 Phosphoinositide-specific phospholipase C family protein (.1) AT5G58700 655 / 0 ATPLC4 phosphatidylinositol-speciwc phospholipase C4 (.1.2) AT5G58690 631 / 0 ATPLC5 phosphatidylinositol-speciwc phospholipase C5 (.1) AT5G58670 577 / 0 ATPLC1 phospholipase C 1, ARABIDOPSIS THALIANA PHOSPHOLIPASE C, phospholipase C1 (.1) AT4G38530 570 / 0 ATPLC1 phospholipase C1 (.1) AT3G47290 374 / 2e-123 ATPLC8 phosphatidylinositol-speciwc phospholipase C8 (.1) AT3G47220 348 / 5e-113 ATPLC9 phosphatidylinositol-speciwc phospholipase C9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028287 [exp] 1112 / 0 AT3G08510 840 / 0.0 phospholipase C 2 (.1.2.3) Lus10014845 [exp] 973 / 0 AT3G08510 866 / 0.0 phospholipase C 2 (.1.2.3) Lus10009891 [exp] 972 / 0 AT3G08510 849 / 0.0 phospholipase C 2 (.1.2.3) Lus10040664 [exp] 711 / 0 AT5G58700 744 / 0.0 phosphatidylinositol-speciwc phospholipase C4 (.1.2) Lus10009894 [exp] 684 / 0 AT2G40116 824 / 0.0 Phosphoinositide-specific phospholipase C family protein (.1) Lus10036182 [exp] 631 / 0 AT3G08510 669 / 0.0 phospholipase C 2 (.1.2.3) Lus10038319 [exp] 625 / 0 AT3G08510 659 / 0.0 phospholipase C 2 (.1.2.3) Lus10018241 [exp] 531 / 0 AT5G58700 532 / 0.0 phosphatidylinositol-speciwc phospholipase C4 (.1.2) Lus10018240 [exp] 437 / 5e-148 AT5G58700 473 / 1e-162 phosphatidylinositol-speciwc phospholipase C4 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G068400 [exp] 866 / 0 AT3G08510 888 / 0.0 phospholipase C 2 (.1.2.3) Potri.010G188800 [exp] 863 / 0 AT3G08510 869 / 0.0 phospholipase C 2 (.1.2.3) Potri.001G252100 [exp] 741 / 0 AT5G58700 791 / 0.0 phosphatidylinositol-speciwc phospholipase C4 (.1.2) Potri.010G188900 [exp] 716 / 0 AT2G40116 806 / 0.0 Phosphoinositide-specific phospholipase C family protein (.1) Potri.008G068300 [exp] 716 / 0 AT2G40116 823 / 0.0 Phosphoinositide-specific phospholipase C family protein (.1) Potri.001G252300 [exp] 693 / 0 AT3G08510 701 / 0.0 phospholipase C 2 (.1.2.3) Potri.009G046600 [exp] 592 / 0 AT3G08510 557 / 0.0 phospholipase C 2 (.1.2.3) Potri.001G252104 [exp] 91 / 6e-22 AT3G08510 82 / 1e-19 phospholipase C 2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00168 [flax] [poplar] C2 C2 domain CL0384 [flax] [poplar] PLC PF00387 [flax] [poplar] PI-PLC-Y Phosphatidylinositol-specific phospholipase C, Y domain CL0384 [flax] [poplar] PLC PF00388 [flax] [poplar] PI-PLC-X Phosphatidylinositol-specific phospholipase C, X domain CL0220 [flax] [poplar] EF_hand PF09279 [flax] [poplar] EF-hand_like Phosphoinositide-specific phospholipase C, efhand-like
Representative CDS sequence Show only first row Show all	>Lus10040199 pacid=23173841 polypeptide=Lus10040199 locus=Lus10040199.g ID=Lus10040199.BGIv1.0 annot-version=v1.0 ATGCTTCTGCTTCCGCCGGCGGGGGGAGATCCCCCGGGGCGCAGGCCCCGCCCCGAGGAAGGACACCTCTCACAACTCTTCACTACCTACTCCGACACCA ACAATGGCCTCATGACCGCCGATCACTTCCGCCGCTTCCTTGTCGAGGTCCAGAAGCAAGAGAACGCCACTCTCGAAGACGCCCAAGCCGCCATCAACGC CGTCCACCAAACCAGGCAATTCAACATTGTCCAGCACCATAAGGGACTCAACCTGGAGAACTTCTTCCGCTACCTCTTCGGCGACCTTAACCCTCCTACC GATCTCAAACGCGGGGTGCATAATGATATGAGCGAGCCACTTTCCCATTACTTCATATACACGGGGCACAACTCGTATCTGACTGGGAACCAACTGAGTA GTGACTGCAGTGACGTCCCTATCATACAGGCACTTCAGAGAGGTGTAAGGGTGATTGAGTTGGATATATGGCCAAACTCCAACAAGGACGACATTGAAGT TCTTCATGGAAGGACACTGACGACTCCTGTGGAACTTATCAAATGTTTGAGATCGATCAAAGAACATGCCTTTACTGCATCTGAGTATCCTGTGGTTATA ACTCTAGAAGACCACCTTACTCCTGATCTCCAGGCTAAAGTTGCTGAGATGGTGACGCAAACATTCGAAGACATCTTGTTCACACCTGATGCAGAATGCT TAAAAGAGTTCCCCTCCCCCGAGTCACTGAAGAAACGGATTATCATATCAACCAAGCCACCAAAAGAGTATCTGAAGGCTAAGGTTCCGAAGGAGGAGGA TGATACACAAAACGGGAAAGCTGGCTCTGATGAAGAAGCATGGGGGAAAGAAGTGCCTCATCTTGACGGTCCTGTTTCAGCTGATGATGATAAGGAGGAA GATCAAGATGATGATGACGACGACGATGAGGATAGCGATGAAGGACTGAAGAAATCACAGTCACAGAAGCTACTTGCACCGGAATACAGGCGTTTGATTG CTATTCATGCTGGAAAGCCTAAAGGAGGCATGAGTGAGTGTCTGAAAGTTGATCCAGAAAAAGTCAGACGTCTAAGCTTGAGTGAGCCGCAGCTGGAGAA GGCTGCTGAGACTTATGGTACAGACATTGTCAGGATTGGCAGGTTTACACAGCGGAACATATTGAGAGTTTATCCAAAGGGCACTCGAATCGACTCGTCC AACTACAACCCCCTAATTGGTTGGATGCATGGAGCTCAAATGGTTGCTTTTAACATGCAGGGGTTCGGAAGATCACTCTGGTTGATGCATGGAATGTTCA AGTCGAACGGAGGGTGTGGTTATGTGAAGAAACCGGATTTTCTATTAAAATCAGGTCCAAACAATGAAGTGTTTGATCCTAGAGTCAAGTTGCCTGTGAA GACAACCCTTAAGGTGAGAATATATATGGGAGAAGGATGGTACTATGATTTCCGTCACACACACTTTGATCAGTACTCCCCACCAGATTTCTACACCAGG GTGGGAATTGCTGGAGTGCCGGCAGATGTAGTGATGAAGAAAACAAAATCATTAGAAGACAACTGGATACCGGTCTGGAACGAAGAGTTCGAGTTCGAAC TAACGGTTCCAGAACTAGCACTGCTCCGACTCGAAGTCCACGAGTACGACATGTCGGAGAAGGACGATTTCGGAGGCCAGACTTGCATCCCTGTGTCGGA AATAAGAAGCGGGATTCGAGCAGTTCCGCTTTATGACCAGGAAGGAAACAAATACAACAACGTTAAGCTGCTGGTGCACTTTGATTTTGTGTGA
AA sequence Show only first row Show all	>Lus10040199 pacid=23173841 polypeptide=Lus10040199 locus=Lus10040199.g ID=Lus10040199.BGIv1.0 annot-version=v1.0 MLLLPPAGGDPPGRRPRPEEGHLSQLFTTYSDTNNGLMTADHFRRFLVEVQKQENATLEDAQAAINAVHQTRQFNIVQHHKGLNLENFFRYLFGDLNPPT DLKRGVHNDMSEPLSHYFIYTGHNSYLTGNQLSSDCSDVPIIQALQRGVRVIELDIWPNSNKDDIEVLHGRTLTTPVELIKCLRSIKEHAFTASEYPVVI TLEDHLTPDLQAKVAEMVTQTFEDILFTPDAECLKEFPSPESLKKRIIISTKPPKEYLKAKVPKEEDDTQNGKAGSDEEAWGKEVPHLDGPVSADDDKEE DQDDDDDDDEDSDEGLKKSQSQKLLAPEYRRLIAIHAGKPKGGMSECLKVDPEKVRRLSLSEPQLEKAAETYGTDIVRIGRFTQRNILRVYPKGTRIDSS NYNPLIGWMHGAQMVAFNMQGFGRSLWLMHGMFKSNGGCGYVKKPDFLLKSGPNNEVFDPRVKLPVKTTLKVRIYMGEGWYYDFRHTHFDQYSPPDFYTR VGIAGVPADVVMKKTKSLEDNWIPVWNEEFEFELTVPELALLRLEVHEYDMSEKDDFGGQTCIPVSEIRSGIRAVPLYDQEGNKYNNVKLLVHFDFV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G08510		ATPLC2	phospholipase C 2 (.1.2.3)		Lus10040199 [exp]	0	1
AT3G23340		CKL10	casein kinase I-like 10 (.1)		Lus10000553 [exp]	1.0	0.8810
AT3G08510		ATPLC2	phospholipase C 2 (.1.2.3)		Lus10028287 [exp]	1.4	0.8774
AT2G35880			TPX2 (targeting protein for Xk...		Lus10029355 [exp]	2.0	0.8478
AT1G78020			Protein of unknown function (D...		Lus10019672 [exp]	3.9	0.8333
AT1G58520		RXW8	lipases;hydrolases, acting on ...		Lus10004597 [exp]	3.9	0.8561
AT5G35570			O-fucosyltransferase family pr...		Lus10017171 [exp]	4.6	0.8081
AT5G14500			aldose 1-epimerase family prot...		Lus10032084 [exp]	4.9	0.8210
AT5G42930			alpha/beta-Hydrolases superfam...		Lus10009361 [exp]	5.7	0.7884
AT1G61100			disease resistance protein (TI...		Lus10018471 [exp]	8.4	0.7886
AT3G51460		rhd4	ROOT HAIR DEFECTIVE4, Phosphoi...		Lus10035993 [exp]	11.3	0.7945

Compare expression of checked genes

Lus10040199 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.