Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05660 934 / 0 EBI, ATNFXL2 NFX1-like 2, EARLY BIRD, Arabidopsis NF-X like 2, sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors (.1) AT1G10170 135 / 3e-32 ATNFXL1 NF-X-like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028286 [exp] 1407 / 0 AT5G05660 1131 / 0.0 NFX1-like 2, EARLY BIRD, Arabidopsis NF-X like 2, sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors (.1) Lus10025071 [exp] 145 / 3e-35 AT1G10170 1365 / 0.0 NF-X-like 1 (.1) Lus10034470 [exp] 134 / 5e-32 AT1G10170 1345 / 0.0 NF-X-like 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G188700 [exp] 994 / 0 AT5G05660 1038 / 0.0 NFX1-like 2, EARLY BIRD, Arabidopsis NF-X like 2, sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors (.1) Potri.015G034500 [exp] 156 / 6e-39 AT1G10170 1363 / 0.0 NF-X-like 1 (.1) Potri.012G043700 [exp] 154 / 4e-38 AT1G10170 1378 / 0.0 NF-X-like 1 (.1) Potri.008G068500 [exp] 140 / 7e-37 AT5G05660 171 / 2e-48 NFX1-like 2, EARLY BIRD, Arabidopsis NF-X like 2, sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040200 pacid=23174174 polypeptide=Lus10040200 locus=Lus10040200.g ID=Lus10040200.BGIv1.0 annot-version=v1.0 ATGTCCTCCGCTGGCGGCAAGCAACAGTCGTTCACCGACTCCGATTCAGATTCCGATCACTCACAGGGCGAATCCAATTCCTCCCTCCGCCACACCGACC TCTCCAATTCCATCTTCAAATCCTACTTCGAGCACACACCCACCGCCACCGCCTCGCCGTCGCCGCACGATCTCTCCAAAATCCAATCTTTCCTCAACTC ATCCTCCTCCGGCGCTCTCTCATGCCTCATCTGCCTGGAGCGCATCCGCCCTTCCGATCCGACCTGGTCCTGCCCTTCTCTCTGCTTCGACGTCTTCCAC CTCCTCTGCATCCAGTCCTGGGCTCGCCAGGCCTCCGATCTCGCCGCTGCCCGTGCAGTCACGCGCCTCCCGATCACTTCCGACAAGGCCTCCGAGACGG CTCTCTGGAATTGCCCCAAATGTAGGTCAGCTTACTCCAAGTCTCAAATCCCTAAATCGTACTTCTGCTTCTGTGGTAAACTCGAGAATCCGTTGAATGA TAATCCCTGGATACTGCCGCATTCCTGTGGCGAGGTGTGTAATCGCCCGTTGAAGAATAACTGCGGCCATTTCTGCTTGTTGTTGTGTCACCCGGGGCCT TGTCCTCCCTGTCCCAAGCTGGTTAAGGCCTCGTGTTATTGTGGCAAGATCGAAGATGTTCGGAGATGTGGATTCAAGGTGTTTTCGTGCAACAATCGAT GCAATAAGCTTTTAGAATGCAAGAAGCACAAATGTAAAGAGATTTGTCACGATGGAGAGTGTCCTCCTTGTCACGAGCGTGGGGTTTATCGTTGCTTGTG TGGGAAGAAACAAGAGGAGAGGGAATGCTGTGTGAGGGAATTCCAATGTGAGAATCCTTGCAAAAAAGAGTTGAGCTGTGGGAAGCATTTGTGCGAGAGA GGGTGTCACTCTCAAGAAGGGTGTGGGGAATGCCCTCTTCAAGGGAAGAGGACTTGCCCTTGTGGGAAGAGAGTTCATGAAGGAATGGCTTGTGATATTG CGGTGCCGTTGTGTGGTGATACTTGTGGTAAGAAGCTGAGCTGTGGATTCCATAGGTGTCATGAGAGATGCCACCGAGGCCAGTGTGTTGAGAATTGCAG AATGGTTATCTCCAAGACATGTCGTTGTGGAAGCTTGAAGAAAGAGGTTTGTGGAAAGAAGCTACGGTGCAAGAATCACAAATGCCCTTCCCCATGTCAT CGAGGTCCCTGTGCCCCTTGCCCTGTGATGGTTGCAATCTCATGTTTTTGTGGTGAAACACACTTTGAGGTTCCGTGCGGAACTGAGATGGATCAAAAGC CTCCTAAATGTCGCAAATTATGTGAAATTGCTCCTTTATGTAGGCATGCACCATACATCAAGCCACACAAATGTCATTATGGGACTTGCCCACCATGTCG GTTAGTTTGTGAAGGAGAGTACCGTTGTGGACATAAGTGCCAATTAAGATGCCATGACTCGAGACCCCCTCCCAGACCTGAATTCACATTAAGACCAAAA AAAAAGAGACAAATTCATCAGCCTGAATGTACACCAGGGTCTCCTTGCCCTCCTTGTCCGGAACTTGTTTGGAGACCATGTGTTGGCCAACACTTCGCTG CAGAGAAAATGATGGTCTGTGCGAACAAAGCTGAGTTTTCTTGTGAAAACCTGTGCGGAAATCCTCTTCCTTGTGGCAATCATTATTGTACAAAGTCCTG CCATGCTGTTAAGTTCAGTCCATCAAAATCACAGGGTCCAATTGGTACAAGTGAAACGTGTGAAAAGTGTAATCTTCGTTGTGAAAAGAAGAGGGAGCCC AGTTGTCCACATCCTTGTACTTTGAGGTGTCATCCAGACGATTGTCCACCCTGCAAGGCACTTGTGAAACGGTCTTGCCACTGTGGTTCGCTGGTTCATG CATTCGAGTGCATGTACTATAACAGCTTATCTAAAAAGGAGCAAATCTCTGTTCGTTCTTGTGGTGGATACTGCCATCGGAAATTGCCGAACTGCACTCA TTTGTGCCCAGAGACATGTCATCCAGGTGATTGTCCATCACCTGACAAGTGCAGCAAAAAGGTGTTTGTTCGCTGTCGATGTCAAACCTTGAAAAAGGAG TGGCTTTGTAAAGATGTTCAAGCAGCATATCACAAAGCTGGTTCTGATCCCAAAGATGTGTCCAGAAATCAGTTTGGACATGGTCTTCTACCTTGCAATT CAGATTGCAAGAGTAAACTACAAGTTGCTGAGCAGGAGTTGCATTTGCGTGCACCAAAGGACGTTGAGAAGGAAAAAGATGGCCCTACTGATGCACACCC TCCCAGACGTAGAAAGCGACGTCAACATATGCAAGAAGAGAAGCAGTTATCATCACTTGAGAAAATCTTCCCCGCCTTAAAGAGGCTCGTTCTAGTGGTC GTCATCATCATTACTCTAATGGCCGCATCATATTTTGGCTATAAGGGTCTAATGTGGCTCTCAGATTACATGAACGAAGTTGAAGAACAAAGACAGGGTA GCAAACGATATCCCAGAGTCTAG
AA sequence Show only first row Show all	>Lus10040200 pacid=23174174 polypeptide=Lus10040200 locus=Lus10040200.g ID=Lus10040200.BGIv1.0 annot-version=v1.0 MSSAGGKQQSFTDSDSDSDHSQGESNSSLRHTDLSNSIFKSYFEHTPTATASPSPHDLSKIQSFLNSSSSGALSCLICLERIRPSDPTWSCPSLCFDVFH LLCIQSWARQASDLAAARAVTRLPITSDKASETALWNCPKCRSAYSKSQIPKSYFCFCGKLENPLNDNPWILPHSCGEVCNRPLKNNCGHFCLLLCHPGP CPPCPKLVKASCYCGKIEDVRRCGFKVFSCNNRCNKLLECKKHKCKEICHDGECPPCHERGVYRCLCGKKQEERECCVREFQCENPCKKELSCGKHLCER GCHSQEGCGECPLQGKRTCPCGKRVHEGMACDIAVPLCGDTCGKKLSCGFHRCHERCHRGQCVENCRMVISKTCRCGSLKKEVCGKKLRCKNHKCPSPCH RGPCAPCPVMVAISCFCGETHFEVPCGTEMDQKPPKCRKLCEIAPLCRHAPYIKPHKCHYGTCPPCRLVCEGEYRCGHKCQLRCHDSRPPPRPEFTLRPK KKRQIHQPECTPGSPCPPCPELVWRPCVGQHFAAEKMMVCANKAEFSCENLCGNPLPCGNHYCTKSCHAVKFSPSKSQGPIGTSETCEKCNLRCEKKREP SCPHPCTLRCHPDDCPPCKALVKRSCHCGSLVHAFECMYYNSLSKKEQISVRSCGGYCHRKLPNCTHLCPETCHPGDCPSPDKCSKKVFVRCRCQTLKKE WLCKDVQAAYHKAGSDPKDVSRNQFGHGLLPCNSDCKSKLQVAEQELHLRAPKDVEKEKDGPTDAHPPRRRKRRQHMQEEKQLSSLEKIFPALKRLVLVV VIIITLMAASYFGYKGLMWLSDYMNEVEEQRQGSKRYPRV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05660		EBI, ATNFXL2	NFX1-like 2, EARLY BIRD, Arabi...		Lus10040200 [exp]	0	1
AT4G26100		CKL1, CK1	casein kinase 1 (.1)		Lus10027628 [exp]	1.7	0.8607
AT4G33650		APEM1, DRP3A, A...	ABERRANT PEROXISOME MORPHOLOGY...		Lus10012076 [exp]	2.2	0.8928
AT5G46210		CUL4, ATCUL4	cullin4 (.1)		Lus10023306 [exp]	2.4	0.8679
AT1G15750		TPL, WSIP1	WUS-INTERACTING PROTEIN 1, TOP...		Lus10006650 [exp]	7.1	0.8364
AT4G25610	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10039246 [exp]	7.4	0.8345
AT4G32360			Pyridine nucleotide-disulphide...		Lus10015217 [exp]	9.9	0.8014
AT3G63460		EMB2221	transducin family protein / WD...		Lus10019752 [exp]	11.5	0.8563
AT1G15130			Endosomal targeting BRO1-like ...		Lus10035265 [exp]	13.0	0.8562
AT3G07630		AtADT2, ADT2	Arabidopsis thaliana arogenate...		Lus10018128 [exp]	13.1	0.8063
AT1G21080			DNAJ heat shock N-terminal dom...		Lus10030713 [exp]	13.8	0.8088

Compare expression of checked genes

Lus10040200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.