Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55950 219 / 2e-62 CCR3, ATCRR3 CRINKLY4 related 3 (.1) AT5G47850 97 / 5e-21 CCR4 CRINKLY4 related 4 (.1) AT1G06840 73 / 2e-13 Leucine-rich repeat protein kinase family protein (.1) AT1G49270 71 / 1e-12 AtPERK7 proline-rich extensin-like receptor kinase 7, Protein kinase superfamily protein (.1) AT3G46290 70 / 2e-12 HERK1 hercules receptor kinase 1 (.1) AT1G68690 70 / 3e-12 AtPERK9 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) AT5G54380 70 / 3e-12 THE1 THESEUS1, protein kinase family protein (.1) AT5G38560 70 / 3e-12 AtPERK8 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) AT3G59420 68 / 8e-12 ACR4 crinkly4 (.1) AT4G32710 67 / 9e-12 PERK14 proline-rich extensin-like receptor kinase 14, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028285 [exp] 566 / 0 AT3G55950 734 / 0.0 CRINKLY4 related 3 (.1) Lus10040663 [exp] 149 / 6e-38 AT3G55950 642 / 0.0 CRINKLY4 related 3 (.1) Lus10018242 [exp] 137 / 6e-34 AT3G55950 632 / 0.0 CRINKLY4 related 3 (.1) Lus10034646 [exp] 132 / 8e-34 AT3G55950 178 / 2e-49 CRINKLY4 related 3 (.1) Lus10034647 [exp] 112 / 1e-25 AT1G73990 868 / 0.0 signal peptide peptidase (.1) Lus10029170 [exp] 95 / 4e-20 AT5G47850 678 / 0.0 CRINKLY4 related 4 (.1) Lus10015091 [exp] 76 / 5e-14 AT5G54650 556 / 1e-178 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Lus10022129 [exp] 75 / 7e-14 AT3G24550 474 / 3e-159 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10024081 [exp] 74 / 2e-13 AT1G61500 333 / 5e-102 S-locus lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G188600 [exp] 223 / 1e-63 AT3G55950 791 / 0.0 CRINKLY4 related 3 (.1) Potri.008G068700 [exp] 214 / 2e-60 AT3G55950 786 / 0.0 CRINKLY4 related 3 (.1) Potri.001G252400 [exp] 193 / 4e-53 AT3G55950 692 / 0.0 CRINKLY4 related 3 (.1) Potri.019G078300 [exp] 94 / 8e-20 AT5G47850 699 / 0.0 CRINKLY4 related 4 (.1) Potri.013G103300 [exp] 84 / 1e-16 AT5G47850 649 / 0.0 CRINKLY4 related 4 (.1) Potri.013G159200 [exp] 80 / 2e-15 AT1G06840 1040 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G159500 [exp] 79 / 3e-15 AT1G06840 1102 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G110400 [exp] 78 / 8e-15 AT5G38560 654 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) Potri.019G131800 [exp] 78 / 9e-15 AT1G06840 1092 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G105200 [exp] 77 / 1e-14 AT5G38560 650 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10040201 pacid=23174046 polypeptide=Lus10040201 locus=Lus10040201.g ID=Lus10040201.BGIv1.0 annot-version=v1.0 ATGAAGAATCCACCTCTTCCTCTAGTTCTCAATCCCAATTTCTCAGCCTTGACCGCGGCCGTCGTCATCCTTCTCTCTTTCTCCTCAATCGCCGATGCCT TGGGCGTCGGATCCACCCTCGCCGTCGCCTCCTCCGGCAACCCCACCGTCTGCGGCATCGTTTCCTACCAGACCACCCAGAGCCTCGTCTGTTACCAAGC CGGAGGAGGGACCATCCAGAACCAGACTGTGACGCTTGGACCCAACGTCTCCTTCATTTCAATCGCCGGCGGCGACGAGTTCATCTGCGGAATCCGCTCC GGCGGATACGATCTGCTCTGTTGGAATACATTCTCTCCGAACTACAACAATTCCGTTATTCTCGACCCCAAGAGAGTCTACCACAACTTCTCTACTCGAT TGCTGAGCGTCTCCGTCGGGGACGATCAGATTTGCTCGACGACGAACGGTTCCGAGAGTGCGAGTTGCTGGAGAGGCGACGAAGCGATTAGAACTCAATT TCCCGGCGGCGGCGGTGGGGAGATTAACGGATTCGTTGCGATTTCATCGGGATTCGGCTTTTCCTGCGGGATTTTGGTCAATGGGAGAGTGATGCGGTGC TGGGGAACCAACCCGATTTCCCGGCGAATCGAATTGGAGTTTGGAAACATGACGATGCTGAGCGTTCAAGCTGGTGGGTCCCATCTCTGCGGAGTGAATT CGACTGGGATTCTTGTTTGCAAAGGGGATATTTCTGCCCGCCAATTGAACATTCTGTCGGACAGTTCTTCTACGTCGTTGGAGTATTTACTGCTGGCTCT CGGAGCCAATCGCAGCTGCGCTCTTCGCAAGCCTAAAATCCTCCCTCCCCTGTCCGTACACGTTTCCTCCCTCTGCGGCGGCGAGGCCCACCCCTACACC GACGGTGATAGCTTGTGCGGTGGCGGCGTTGCAGGATTAGGATTAGGTGTTTGCAGGCCTAGTAAGCTCAACATTTCAACTCCATTGCCGCCGCCGACGC AATCGCCCCAATCGCCACCGTCCGAATCATCTCGCCCTCCATCTAAAGCTCTGACAAGGGGGCTATTGGCGTTCGCCATAATCGGATCAGTCGGAATCTT CTCCGGAATCTGCACAGTGATTTACTGCATCTGGAGCGGGGCATGTTGCCTCGGACGGAAAAAGATCCACAACTCCGTCCAGCCAACAATCACCAGAGCT GGATCCAACGGCAACGCAATGAGGCGCCAGAGGAGCGGGACCTCGGCGGCGGACAGAGCCGCCGAGGAATTCACATTCTCGGAACTGGCCTCCGCCACCA ACGGATTCTCCCCGGAGAACAAGATCGGCGGCGGAAGCTACGGCGTCGTTTACAAAGGAAAACTCTCTGACGGCAGAGAAGTAGCGATCAAGAGAGGCGA AACTAGCAAGAAGGCGAAGAAATACCAGGAGAAAGAAAGCGCGTTCGAATCGGAACTGTCGTTCCTCTCCAGAGTCCACCATAAACATTTGGTAAGACTT GTAGGGTTTTGCGACGACGGAGAAGATGAAAAGCTTTTGGTTTATGAATACATGAAGAACGGAGCTCTGTACGATCATCTACACAATTCCGACGAGAAAT CCGCCGCCGCCTCCGCCGCTTCCGGCGGTGGGGGGGCGTAA
AA sequence Show only first row Show all	>Lus10040201 pacid=23174046 polypeptide=Lus10040201 locus=Lus10040201.g ID=Lus10040201.BGIv1.0 annot-version=v1.0 MKNPPLPLVLNPNFSALTAAVVILLSFSSIADALGVGSTLAVASSGNPTVCGIVSYQTTQSLVCYQAGGGTIQNQTVTLGPNVSFISIAGGDEFICGIRS GGYDLLCWNTFSPNYNNSVILDPKRVYHNFSTRLLSVSVGDDQICSTTNGSESASCWRGDEAIRTQFPGGGGGEINGFVAISSGFGFSCGILVNGRVMRC WGTNPISRRIELEFGNMTMLSVQAGGSHLCGVNSTGILVCKGDISARQLNILSDSSSTSLEYLLLALGANRSCALRKPKILPPLSVHVSSLCGGEAHPYT DGDSLCGGGVAGLGLGVCRPSKLNISTPLPPPTQSPQSPPSESSRPPSKALTRGLLAFAIIGSVGIFSGICTVIYCIWSGACCLGRKKIHNSVQPTITRA GSNGNAMRRQRSGTSAADRAAEEFTFSELASATNGFSPENKIGGGSYGVVYKGKLSDGREVAIKRGETSKKAKKYQEKESAFESELSFLSRVHHKHLVRL VGFCDDGEDEKLLVYEYMKNGALYDHLHNSDEKSAAASAASGGGGA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55950		CCR3, ATCRR3	CRINKLY4 related 3 (.1)		Lus10040201 [exp]	0	1
AT3G08510		ATPLC2	phospholipase C 2 (.1.2.3)		Lus10028287 [exp]	2.0	0.8471
AT2G02010		GAD4	glutamate decarboxylase 4 (.1)		Lus10031934 [exp]	5.5	0.7833
AT4G21310			Protein of unknown function (D...		Lus10007626 [exp]	11.8	0.8125
AT4G37250			Leucine-rich repeat protein ki...		Lus10010263 [exp]	14.7	0.8018
AT5G23940		PEL3, DCR, EMB3...	PERMEABLE LEAVES3, EMBRYO DEFE...		Lus10027500 [exp]	17.8	0.7993
AT2G02010		GAD4	glutamate decarboxylase 4 (.1)		Lus10035096 [exp]	19.4	0.7344
AT5G03795			Exostosin family protein (.1)		Lus10025178 [exp]	20.6	0.7870
AT1G79480			Carbohydrate-binding X8 domain...		Lus10000278 [exp]	26.0	0.8008
AT3G07420		ATNS2, SYNC2_AR...	SYNTHETASE C2, asparaginyl-tRN...		Lus10025874 [exp]	30.3	0.8016
AT5G06900		CYP93D1	"cytochrome P450, family 93, s...		Lus10035502 [exp]	31.0	0.7293

Compare expression of checked genes

Lus10040201 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.