Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40120 590 / 0 Protein kinase superfamily protein (.1) AT1G73460 525 / 2e-171 Protein kinase superfamily protein (.1) AT1G73450 524 / 3e-171 Protein kinase superfamily protein (.1) AT3G17750 517 / 9e-169 Protein kinase superfamily protein (.1) AT4G03175 208 / 2e-63 Protein kinase superfamily protein (.1) AT5G35980 214 / 1e-58 YAK1 yeast YAK1-related gene 1 (.1.2) AT1G13350 179 / 5e-47 Protein kinase superfamily protein (.1.2) AT3G25840 178 / 5e-47 Protein kinase superfamily protein (.1.2) AT3G53640 169 / 5e-44 Protein kinase superfamily protein (.1) AT4G24740 162 / 4e-43 AME1, AFC2 FUS3-complementing gene 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028283 [exp] 924 / 0 AT2G40120 587 / 0.0 Protein kinase superfamily protein (.1) Lus10031902 [exp] 526 / 4e-172 AT1G73450 1318 / 0.0 Protein kinase superfamily protein (.1) Lus10042297 [exp] 513 / 1e-166 AT1G73450 1335 / 0.0 Protein kinase superfamily protein (.1) Lus10026360 [exp] 502 / 2e-163 AT1G73460 680 / 0.0 Protein kinase superfamily protein (.1) Lus10031328 [exp] 291 / 1e-93 AT1G73450 405 / 6e-135 Protein kinase superfamily protein (.1) Lus10009542 [exp] 213 / 2e-57 AT5G35980 1147 / 0.0 yeast YAK1-related gene 1 (.1.2) Lus10020366 [exp] 212 / 2e-57 AT5G35980 1159 / 0.0 yeast YAK1-related gene 1 (.1.2) Lus10036878 [exp] 166 / 2e-44 AT4G24740 662 / 0.0 FUS3-complementing gene 2 (.1.2) Lus10021688 [exp] 169 / 4e-43 AT3G25840 736 / 0.0 Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G188400 [exp] 632 / 0 AT2G40120 576 / 0.0 Protein kinase superfamily protein (.1) Potri.008G069000 [exp] 627 / 0 AT2G40120 607 / 0.0 Protein kinase superfamily protein (.1) Potri.012G039700 [exp] 525 / 1e-171 AT1G73460 1343 / 0.0 Protein kinase superfamily protein (.1) Potri.015G033400 [exp] 520 / 2e-169 AT1G73460 1356 / 0.0 Protein kinase superfamily protein (.1) Potri.019G043400 [exp] 213 / 7e-58 AT5G35980 1088 / 0.0 yeast YAK1-related gene 1 (.1.2) Potri.013G075300 [exp] 211 / 3e-57 AT5G35980 1134 / 0.0 yeast YAK1-related gene 1 (.1.2) Potri.008G119100 [exp] 185 / 2e-48 AT3G25840 689 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G126900 [exp] 184 / 5e-48 AT3G25840 727 / 0.0 Protein kinase superfamily protein (.1.2) Potri.006G244400 [exp] 170 / 3e-46 AT4G32660 634 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.010G049100 [exp] 163 / 2e-43 AT4G24740 642 / 0.0 FUS3-complementing gene 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10040203 pacid=23173862 polypeptide=Lus10040203 locus=Lus10040203.g ID=Lus10040203.BGIv1.0 annot-version=v1.0 ATGGCAACTGCGGAACTTTCCGCTGGGGGATGCGGCGGCGGAGTAGGTGGGGATGATGACGTGGACCAAATTCTCCAATTTCTGCGCAGGAACGGCCTGG GAGAGGTCGAATCGGCTCTTAAACGGGATATACTCGAGAGAAAAGAATTTGATTCTGTCGATTTCGAGAAATTTTTTTTCGAGCTACCTCCGGTGAGAGT TCCGGCCAGTCTCTGTACATCGGCGGCGGACGGTGGCTGTAGATCGGATTCTGGGTTTAGCTCCGATGATGAGTTTGTCAGCGTGGGCTCCACCACTACC GGCGTCTGTTCTTCAGAATTCACTAATCCGTACGGACTCCGGTCCGGATCGCAGCCTAACTCGGACACCTCCTCGGAACGAATGTCACAATTCGGGACTG CTCGTGACTACCCCGATTTCGATATGCAGAATGATCTGTTCCGGCACGATAACGAGAAAGATGAAGGCTTTTTCAGAGATACAAGTGAGGATAAGTTTGT GATGAGCTCTGGTGGAACGTCAGATCAAGCTGAGGATAATACGGTTGGATTGTATGACAAATCTGAAGGATTCGATACTGATCAAGCAAGCGTTGATTTC TTGGACAAGCCATGTCTTCTCGATGGTGCATTCATGGACGGGGCTAAATCGACCGATTTAGGAAGCCAACTCGAAAATTTCGTCTACTTGAGATCCAAGG AAACTGCTTTGGCTCTTGTACATACAACAGATACTTATGACTGTATAAAGGAAGATTTCAAAATCGAAGATCGTAAAAGTACTAACTCCCAACTAGTACC ATTCGGAGTGGACTACGATGAGCTAGAACGCGATGAACTGAGTGAAGCACCCAATGAACTCCCAACCGCTACAGAAGGGGAGGATACCACTAACGACGAG CTTCTCATGTACCAAAATCTGGAGGATGAGTACGAAGTCTTCGATCTACGAATCATCCACAGGAAGAACAGGACTGCAAGCGTTGACTTCTTGGACAAGC CATGTCTTCTTGATGGAGCATTCGCGAACCGGGCTAAATCGCCTGATTCAAGAAGCCAACTTGAAAATTTCGTCTACTTGAGCTCCAAGGAAACTGCTAT GGCTCTTGTACATACAACAGATACTTATGACTGCATAAAGGAAGAATCAAAAATTGAAGATTGTAAAAGTACTAACTCTCAACTAGTACCATTCGGAGTG GATTATGATGAGCTAGAACGAGATGAACTGAGCGAAGCACCCAACGAACTCCCAGCCGCTACAGAAGGGGAGGATACCGGTAATGACGAGCTTCTCATGT ATGAAAATCAGGAGGATGAGTACGAAGTCTTCGATCTACGAATCATCCACCGGAAGAACAGAACGGGATTCGAGGAGAACAAGGAGTTCCCTATCGTACT AAACGTGGTGATCGGAGGCAGATACTATGTCACCGAGTATCTAGGCTCAGCAGCTTTCAGCAAAGTAGTGCAAGCTCAAGATCTCTACACGGGACTCGAA GTTTGCCTGAAGATCATTAAGAACGATAAGGACTTCTTCGATCAAAGCTTGGACGAGATTAAGCTTCTGAAGCTTGTGAACAAGCACGATCCGAACGATG ATAGGCACATTTTACGCCTTTATGACTACTTCTACCATCAGGAACACCTGTTCATCGTATGCGAACTCCTGCGAGCTAACTTGTACGAGTTTCAGAAGTT CAATCAGGAGTCAGGCGCCAAACCCTACTTCACATTGAGCAGACTTCAGATGATAACTCGACAGTGTCTCGAGGCGTTGGAGTACTTGCACGGATTGGGA ATCATTCATTGTGATCTGAAACCGGAGAATATTCTGATAAAGAGTTACCGGAGATGCGAAATCAAGGTTATTGATTTAGGAAGCAGCTGCTTCAAGACAG ATAACTTGTGCTTGTACGTGCAGTCTCGTTCATACCGTGCACCTGAAGTCATGCTAGGCCTTCCTTACGATGAAAGGGTCGATATGTGGTCCCTTGGATG CATCTTAGCTGAGCTATGCTCAGGGGAGGTGCTGTTTCCGAACAATTCAGTGGCAGTGATTCTGGGTCGGATGGTCGGAGTTCTTGGCGGTATAGACACC GAAATGCTGGAGAATGGGCAAGAGACTGACAAATACTTCACGAAGGAGGGCGACCTTTATTTCGTTAACGAGGAGACGGAGCAAGTAGAGTACATAATCC CGGAGGAAGCCTCATTGGATGACAAAGTGGGAACCTCCGACGAGATGTTCCTGGACTTCGCAAGGAGTTTGCTGGAGATCAATCCTTCTCGGAGGCTGAC AGCGAGCCAGGCGCTTCGTCATCCTTGGCTATCTCATTCGTACGACTGA
AA sequence Show only first row Show all	>Lus10040203 pacid=23173862 polypeptide=Lus10040203 locus=Lus10040203.g ID=Lus10040203.BGIv1.0 annot-version=v1.0 MATAELSAGGCGGGVGGDDDVDQILQFLRRNGLGEVESALKRDILERKEFDSVDFEKFFFELPPVRVPASLCTSAADGGCRSDSGFSSDDEFVSVGSTTT GVCSSEFTNPYGLRSGSQPNSDTSSERMSQFGTARDYPDFDMQNDLFRHDNEKDEGFFRDTSEDKFVMSSGGTSDQAEDNTVGLYDKSEGFDTDQASVDF LDKPCLLDGAFMDGAKSTDLGSQLENFVYLRSKETALALVHTTDTYDCIKEDFKIEDRKSTNSQLVPFGVDYDELERDELSEAPNELPTATEGEDTTNDE LLMYQNLEDEYEVFDLRIIHRKNRTASVDFLDKPCLLDGAFANRAKSPDSRSQLENFVYLSSKETAMALVHTTDTYDCIKEESKIEDCKSTNSQLVPFGV DYDELERDELSEAPNELPAATEGEDTGNDELLMYENQEDEYEVFDLRIIHRKNRTGFEENKEFPIVLNVVIGGRYYVTEYLGSAAFSKVVQAQDLYTGLE VCLKIIKNDKDFFDQSLDEIKLLKLVNKHDPNDDRHILRLYDYFYHQEHLFIVCELLRANLYEFQKFNQESGAKPYFTLSRLQMITRQCLEALEYLHGLG IIHCDLKPENILIKSYRRCEIKVIDLGSSCFKTDNLCLYVQSRSYRAPEVMLGLPYDERVDMWSLGCILAELCSGEVLFPNNSVAVILGRMVGVLGGIDT EMLENGQETDKYFTKEGDLYFVNEETEQVEYIIPEEASLDDKVGTSDEMFLDFARSLLEINPSRRLTASQALRHPWLSHSYD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40120			Protein kinase superfamily pro...		Lus10040203 [exp]	0	1
AT3G07970		QRT2	QUARTET 2, Pectin lyase-like s...		Lus10026299 [exp]	5.8	0.8960
AT3G53520		ATUXS1, UXS1	UDP-glucuronic acid decarboxyl...		Lus10024436 [exp]	8.1	0.9132
AT2G27920		SCPL51	serine carboxypeptidase-like 5...		Lus10036578 [exp]	8.8	0.8946
AT3G27000		ATARP2, WRM, AR...	WURM, actin related protein 2 ...		Lus10006156 [exp]	13.6	0.8895
AT2G27740			Family of unknown function (DU...		Lus10019529 [exp]	16.5	0.8680
					Lus10040842 [exp]	22.7	0.8897
AT2G33385		ARPC2B	actin-related protein C2B (.1....		Lus10023737 [exp]	23.9	0.8768
AT5G57830			Protein of unknown function, D...		Lus10022171 [exp]	25.0	0.8865
AT5G57830			Protein of unknown function, D...		Lus10010774 [exp]	26.3	0.8839
AT2G27740			Family of unknown function (DU...		Lus10043372 [exp]	27.3	0.8118

Compare expression of checked genes

Lus10040203 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.