Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07200 558 / 0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G29970 534 / 7e-173 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT2G40130 367 / 8e-116 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G57710 178 / 2e-45 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT4G30350 148 / 3e-36 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT3G52490 139 / 2e-33 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT4G29920 107 / 3e-23 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT5G57130 106 / 6e-23 Clp amino terminal domain-containing protein (.1) AT1G74310 74 / 3e-13 HOT1, ATHSP101 heat shock protein 101 (.1) AT5G50920 72 / 1e-12 CLPC1, CLPC, ATHSP93-V, HSP93-V, DCA1 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028281 [exp] 1631 / 0 AT1G07200 407 / 3e-127 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10036183 [exp] 430 / 2e-134 AT2G29970 566 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10038320 [exp] 342 / 6e-101 AT2G29970 696 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10028282 [exp] 197 / 7e-58 AT2G40130 149 / 9e-49 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10019984 [exp] 162 / 2e-40 AT5G57710 912 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015511 [exp] 153 / 1e-37 AT5G57710 899 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10021291 [exp] 120 / 3e-27 AT3G52490 690 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10008902 [exp] 119 / 4e-27 AT5G57710 392 / 3e-124 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10023201 [exp] 116 / 4e-26 AT5G57710 404 / 1e-127 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G188200 [exp] 946 / 0 AT1G07200 624 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.008G069100 [exp] 914 / 0 AT2G29970 610 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.009G046700 [exp] 387 / 2e-116 AT2G29970 658 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G252500 [exp] 383 / 5e-115 AT2G29970 668 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.018G097300 [exp] 153 / 1e-37 AT5G57710 998 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G175200 [exp] 152 / 2e-37 AT5G57710 913 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.018G140900 [exp] 143 / 2e-34 AT5G57130 751 / 0.0 Clp amino terminal domain-containing protein (.1) Potri.006G073800 [exp] 135 / 5e-32 AT4G29920 693 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.008G017600 [exp] 129 / 3e-30 AT3G52490 635 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.016G071800 [exp] 119 / 5e-27 AT3G52490 785 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF07724 [flax] [poplar] AAA_2 AAA domain (Cdc48 subfamily)
Representative CDS sequence Show only first row Show all	>Lus10040206 pacid=23174109 polypeptide=Lus10040206 locus=Lus10040206.g ID=Lus10040206.BGIv1.0 annot-version=v1.0 ATGCCTACGCCGGTGAGTACAGCCAGGCAATGCTTGACGCCGGAAGCTGCCCACGCGCTGGACGAGGCAGTACGCGTGGCCAAGAAGAGGGGACACGGCC AGACGACGTCGCTTCACGCCGTCTCCGCCCTCCTTTCCTTCCCTTCATCCGCCCTCCGTGACGCCTGTACACGCGCTAGGAACTCTGCCTACTCCACGCG CCTCCAGTTTAAGGCGCTCGACCTCTGCCTCAGCGTCTCCCTCGACCGCGTCCCTTCCGCCGGCGACAGCGGCGGAGAGTCGTCGCCGCCGGTTTCCAAC TCGCTCATGGCGGCGATCAAGCGGTCTCAGGCGAACCAGAGGCGGCAGCCGGAGAGCTTCCATTTGTTCCATCAGTTTTCCTCTCAAAACATCAACTTCA ATCAGTTGACGGCGTCTTCACCATCTTCTCCTTCATCATCCTCTTCTTCCGTTTCTTGCATCAGGGTGGATCTAAGGAACCTGATTATGTCGATCCTGGA CGACCCGGTTGTCAGCCGGGTCTTCTCCGATGCCGGCTTCCGGAGCTTCGAAATTAAACTCGCGGTTTTCCGGCCCATCCCTCTCCATCTTAAAACCCCA ACTCTCGCCTACTCGGATCCGGGTCGGAAGAACGGGTTCACTTTCCAGTTCCCGGGTAGTTTCCCCGGGTTCTTCAGCGGGAACGAGAACTTCCGAAGAA TCGGGGAAGTACTGGGGAGAAGCCAGGGGAGGAATCCTCTGCTTCTCGGCGTATGCGCCTGCGATGAGCTCGCTAACTTCACCGAATCAGTAGAGAAAAG GAAGAAATACGACGGCGGTGGAAACAACAACATCCTTCCGACGGGATTGTCCGGGTTGAACGTGATTCGATTGGAGAGTGAGATCTCTCAATTCCTCAGC CAGAAAAAATCGGATAAAGGAGATCTCGATCCCCGATTGGTAGAAGTGGATCGATCTCTGGACCGGGATCCGGGACCCGGATCGGTTGTGAGCTTCGGAG ATTTGGATTCGTTTGTGAAGAACGAAGATGGAAGAGTGAGTTACGTAGTGGAGAGATTGACGAGATTGGTGCAGGGTAGTAATAGTAAGCTGTGGTTGAT CGGTGCGGCAGCGAGCTACGAGACATATTCAAAGTTTGTAGGGAAGTTTCCTTGTGTTGTCAAGGACTGGGATCTGCAGCTGTTGCCCATCACTTCCGTC ACTAAAGCTTCAGCTTCCTTTGCTGCTGAATCTTACCCTAAATCCAGCTTCTTCCTTGCTGCAAGTTGCAGTTTGATGGAGTCGTTTATTCCATTTGGTG GATTCTTTTCGACACCATCGGATTTCAAGGTGCCCTTAGGCAGCCCTTACCAGTATATGACAACACGTTGTCTCCCGTGCAATCAGCAAGAGTCAGTCAC CCTTTCGAGACGATCGTCAGTTCCTACGATTACAGATCAGTATCATCAACCTCTTGAGTTACCTTCTTGGTTGAAGGCTGACTTAGATACTTCAGTCTTG CTAACTGACATCATTTCGATCGGAACAGGCATATTTGCTCGATTTAATTGCAAATGCCGTGTTATATCTTCAGTGCAGATTAGAGATGATAAAGATGTGC TGAGTTGCAGAGCAGCCAGTTTGCAGATAGAACAGGATTTCATGTGTCAAGGCCAATCACCTTCTGTTGACATTCATCCTCCTAAGTTTCCTACCATCAT GGGCTTTAGGCTGGATGAAGACGGTAAAAGGGGAGTAGGGTCTGGAAATGATAGCACAACGTACTTAAAAGCTGCTTCATCTGTCACCATTGATTCAGCT GTTTCTTTGCCTGCAATTGGGAAACAAAGTGAAAAGCTTTCGAATGAAGATGCTGAATCTGGCAGTACTGCTCTGAAATCTCCTCGTAGTTTTTCAAATT CAAGCATGTGTTATGGTAGCCAAGCATCTCCTTCATCTGTGAACTCCATGACAATGGATCTTGGCCTTCGTATAAGCTCTGCTCCTCCCATCAGTCACCA AGATATCCGACAAGACCTGTCGCTATCCTTCTCAGGAATCACAGATGTCAATGGAGGAAGTATTTCTGATTCTTCACCAAAGTTGATTCCTCAGCGTGCT GTTAGTAACTTCAAGGATCTTCTCCGGTATCTATCTGACCGAGTTGGCTGGCAAAATGAGGCCATACGTGTTGTCAGCGAAACAATAGCCGATTTCAGGA CTCGAGATGGAAATGAACGAGGAAGGAACATATGGTTTAGCTTCCTTGGACCTGACCGGGCGGGTAAGAGGAAAGTTGCTTCAGCGGTTTCCGAGTTCAT TTTTGGAACCAAGGAAAACTTCGTCTGTGCAAACGTGGATCACCAATTTGACCGACATGGATTCAGTTCGATGTCGAGAGGGAAAACAGTGGTGGATTAT GTTGCTAGGGAGCTCTCCAGGAGGCCGGTTTCCGTTGTGTTACTCGAAAATATCGACAAAGCTGATGTTCAGGTGCAGAACAGCTTGTCCTGCGCCGTTC AGACCGGAAAGTTCTCTGATTCTCACGGACGAGAAGTTTCCATCAACAATGCAGTAATCATTACAACCTCAGTAGCTACTACCAGGCTTTCCCAGAAATT GTCTGCATATTCTGAGGATCAAGTTCTGAGAGCAAAAGGGTGGCCAATTCGAATATTAATTGAGAAACATTCCGAATTAGGCCAGGACCTTACTCTGTCA GTAAACAACGGCAAGAAATCCAACTCCATCTTCAAAAGGAAGCTTATAGGAATGAACCAAACTGTAGCAGTCCAGGATTTCCACGAATCGGAGCTAGCAA AACGCGCACACAAGGAACCGATCAGGAGCCTAGACTTGAACCTTCCGGCGCAAGAAAATGACTTGGCTGTCACGGAAGGTGAGAACTTGGATCACTCCAA AGCTTGGTTACAGGGCTTCTATGGCCGAGTCGACAGAGTGGTGGAGTTCAATCCATTTGACTTCGACGCACTGGCTGCCCGAATCTCCGACAAGATAAAG AAGAGCTTTCACAAATTTGTCGACATCGAGTGTTGTCTGGACATTGATCCGAAGGTTATGGAGCAGCTTCTTGCAACAGCTTATGTATCTGATCATAATC GGACGGTGGAAGATTGGATAGAACAAGTTCTGGGACGGGAATTTGCGCAAGTCAGGAGAAAGCACGGCGAACTGAATGCCGATTACATGTTGAAACTCGT CGCAAGTGACGTGGAAGAGGCCGATAATCGAAGAGGTTGCCTTCCGCTGAGAGTAGTCAGCAACTGA
AA sequence Show only first row Show all	>Lus10040206 pacid=23174109 polypeptide=Lus10040206 locus=Lus10040206.g ID=Lus10040206.BGIv1.0 annot-version=v1.0 MPTPVSTARQCLTPEAAHALDEAVRVAKKRGHGQTTSLHAVSALLSFPSSALRDACTRARNSAYSTRLQFKALDLCLSVSLDRVPSAGDSGGESSPPVSN SLMAAIKRSQANQRRQPESFHLFHQFSSQNINFNQLTASSPSSPSSSSSSVSCIRVDLRNLIMSILDDPVVSRVFSDAGFRSFEIKLAVFRPIPLHLKTP TLAYSDPGRKNGFTFQFPGSFPGFFSGNENFRRIGEVLGRSQGRNPLLLGVCACDELANFTESVEKRKKYDGGGNNNILPTGLSGLNVIRLESEISQFLS QKKSDKGDLDPRLVEVDRSLDRDPGPGSVVSFGDLDSFVKNEDGRVSYVVERLTRLVQGSNSKLWLIGAAASYETYSKFVGKFPCVVKDWDLQLLPITSV TKASASFAAESYPKSSFFLAASCSLMESFIPFGGFFSTPSDFKVPLGSPYQYMTTRCLPCNQQESVTLSRRSSVPTITDQYHQPLELPSWLKADLDTSVL LTDIISIGTGIFARFNCKCRVISSVQIRDDKDVLSCRAASLQIEQDFMCQGQSPSVDIHPPKFPTIMGFRLDEDGKRGVGSGNDSTTYLKAASSVTIDSA VSLPAIGKQSEKLSNEDAESGSTALKSPRSFSNSSMCYGSQASPSSVNSMTMDLGLRISSAPPISHQDIRQDLSLSFSGITDVNGGSISDSSPKLIPQRA VSNFKDLLRYLSDRVGWQNEAIRVVSETIADFRTRDGNERGRNIWFSFLGPDRAGKRKVASAVSEFIFGTKENFVCANVDHQFDRHGFSSMSRGKTVVDY VARELSRRPVSVVLLENIDKADVQVQNSLSCAVQTGKFSDSHGREVSINNAVIITTSVATTRLSQKLSAYSEDQVLRAKGWPIRILIEKHSELGQDLTLS VNNGKKSNSIFKRKLIGMNQTVAVQDFHESELAKRAHKEPIRSLDLNLPAQENDLAVTEGENLDHSKAWLQGFYGRVDRVVEFNPFDFDALAARISDKIK KSFHKFVDIECCLDIDPKVMEQLLATAYVSDHNRTVEDWIEQVLGREFAQVRRKHGELNADYMLKLVASDVEEADNRRGCLPLRVVSN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40130			Double Clp-N motif-containing ...		Lus10040206 [exp]	0	1
AT2G40130			Double Clp-N motif-containing ...		Lus10028282 [exp]	1.0	0.9355
AT1G07200			Double Clp-N motif-containing ...		Lus10028281 [exp]	1.4	0.9332
AT5G05200			Protein kinase superfamily pro...		Lus10012865 [exp]	1.7	0.9280
AT2G45670			calcineurin B subunit-related ...		Lus10009312 [exp]	2.4	0.8982
AT1G17820			Putative integral membrane pro...		Lus10040647 [exp]	2.8	0.9081
AT1G05200		GLUR3, ATGLR3.4	glutamate receptor 3.4 (.1.2)		Lus10027171 [exp]	3.0	0.8831
AT1G72790			hydroxyproline-rich glycoprote...		Lus10008464 [exp]	4.0	0.8891
AT3G51150			ATP binding microtubule motor ...		Lus10025969 [exp]	5.5	0.9016
AT1G12330			unknown protein		Lus10028918 [exp]	5.9	0.8460
					Lus10008674 [exp]	6.5	0.8924

Compare expression of checked genes

Lus10040206 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.