Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11200 282 / 6e-97 Alfin AL2 alfin-like 2 (.1.2) AT5G05610 281 / 1e-96 Alfin AL1 alfin-like 1 (.1.2) AT5G20510 238 / 4e-79 Alfin AL5 alfin-like 5 (.1) AT3G42790 235 / 3e-78 Alfin AL3 alfin-like 3 (.1) AT2G02470 229 / 6e-76 Alfin AL6 alfin-like 6 (.1.2) AT1G14510 227 / 5e-75 Alfin AL7 alfin-like 7 (.1) AT5G26210 202 / 2e-65 Alfin AL4 alfin-like 4 (.1) AT5G35210 40 / 0.0007 metalloendopeptidases;zinc ion binding;DNA binding (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028280 [exp] 348 / 8e-123 AT5G05610 333 / 7e-117 alfin-like 1 (.1.2) Lus10014843 [exp] 345 / 7e-122 AT5G05610 363 / 2e-128 alfin-like 1 (.1.2) Lus10009889 [exp] 345 / 9e-122 AT5G05610 358 / 2e-126 alfin-like 1 (.1.2) Lus10005035 [exp] 278 / 4e-95 AT5G05610 325 / 2e-113 alfin-like 1 (.1.2) Lus10027805 [exp] 271 / 4e-92 AT5G05610 320 / 6e-111 alfin-like 1 (.1.2) Lus10026268 [exp] 235 / 3e-78 AT2G02470 382 / 2e-135 alfin-like 6 (.1.2) Lus10026269 [exp] 235 / 4e-78 AT2G02470 380 / 7e-135 alfin-like 6 (.1.2) Lus10015637 [exp] 234 / 5e-78 AT5G20510 353 / 4e-124 alfin-like 5 (.1) Lus10042402 [exp] 207 / 1e-67 AT2G02470 357 / 4e-126 alfin-like 6 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G069200 [exp] 304 / 1e-105 AT5G05610 336 / 5e-118 alfin-like 1 (.1.2) Potri.010G188100 [exp] 298 / 3e-103 AT5G05610 333 / 6e-117 alfin-like 1 (.1.2) Potri.016G116900 [exp] 281 / 2e-96 AT5G05610 305 / 1e-105 alfin-like 1 (.1.2) Potri.006G100900 [exp] 270 / 3e-92 AT5G05610 311 / 6e-108 alfin-like 1 (.1.2) Potri.018G050200 [exp] 242 / 5e-81 AT5G20510 343 / 4e-120 alfin-like 5 (.1) Potri.003G044700 [exp] 234 / 4e-78 AT2G02470 363 / 3e-128 alfin-like 6 (.1.2) Potri.006G223500 [exp] 234 / 7e-78 AT5G20510 327 / 5e-114 alfin-like 5 (.1) Potri.004G230500 [exp] 231 / 1e-76 AT2G02470 361 / 3e-127 alfin-like 6 (.1.2) Potri.006G145300 [exp] 227 / 4e-75 AT5G20510 311 / 1e-107 alfin-like 5 (.1) Potri.019G060900 [exp] 43 / 0.0001 AT2G40770 1921 / 0.0 zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [flax] [poplar] zf-FYVE-PHD PF00628 [flax] [poplar] PHD PHD-finger CL0390 [flax] [poplar] PF12165 [flax] [poplar] Alfin Alfin
Representative CDS sequence Show only first row Show all	>Lus10040207 pacid=23174008 polypeptide=Lus10040207 locus=Lus10040207.g ID=Lus10040207.BGIv1.0 annot-version=v1.0 ATGACTTCCATCTCCACTAGCCCACGCACGGTTGAAGAGATCTTCAAGGACTACACCGCCCGCCGCTCCGCCCTCCTCCGCGCTCTCACTCTCGATGTCG ACGATTTCTACTCGCAATGCGATCCAGAAAAGGAGAATCTGTGCTTGTATGGACACCCAAACGAGTCATGGGAGGTGACACTTCCGGCAGAGGAGGTTCC ACCGGAGCTTCCCGAGCCAGCGTTGGGCATCAATTTCGCTAGAGACGGAATGCAGCGCAAAGATTGGCTCTCTCTTGTTGCAGTGCATAGCGACTGCTGG CTGCTCTCAGTGGCATTCTATTTCGGTGCCCGCCTTAATCGCAACGAAAGGAAGCGCCTTTTCAGTATGACGAATGAATTCCCCACCCTCTTTGAAGTTA GATCACAAGAGGGGCATGCGAAAACTAACTCGAAGCCACTCGACGAGAGCTATGGGGACGATGAGGATGAGCATGGGGAGACTGTTTGTGGCAGCTGCGG AGGAACTTACAGTGCCGACGAGTTTTGGATTGGCTGCGATATCTGCGAACGATGGTATCACGGGAAATGCGTGAAGATCACACCGGCAAAGGCGGATAAC ATCAAGCATTACAAGTGTCCGTCTTGCTGCACGAAAAAGGCTAGGCAGTAG
AA sequence Show only first row Show all	>Lus10040207 pacid=23174008 polypeptide=Lus10040207 locus=Lus10040207.g ID=Lus10040207.BGIv1.0 annot-version=v1.0 MTSISTSPRTVEEIFKDYTARRSALLRALTLDVDDFYSQCDPEKENLCLYGHPNESWEVTLPAEEVPPELPEPALGINFARDGMQRKDWLSLVAVHSDCW LLSVAFYFGARLNRNERKRLFSMTNEFPTLFEVRSQEGHAKTNSKPLDESYGDDEDEHGETVCGSCGGTYSADEFWIGCDICERWYHGKCVKITPAKADN IKHYKCPSCCTKKARQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05610	Alfin	AL1	alfin-like 1 (.1.2)		Lus10040207 [exp]	0	1
AT5G20570		HRT1, ROC1, RBX...	REGULATOR OF CULLINS-1, RING-b...		Lus10015667 [exp]	1.0	0.9423
AT5G19910		MED31	SOH1 family protein (.1.2)		Lus10016131 [exp]	3.0	0.9297
AT5G09310			unknown protein		Lus10037415 [exp]	3.5	0.9273
AT3G50300			HXXXD-type acyl-transferase fa...		Lus10031725 [exp]	3.7	0.9247
AT5G58710		ROC7	rotamase CYP 7 (.1)		Lus10040666 [exp]	4.7	0.9282
AT4G13870		WRNEXO, ATWRNEX...	Werner syndrome-like exonuclea...		Lus10039164 [exp]	5.3	0.9358
AT1G65930		cICDH	cytosolic NADP+-dependent isoc...		Lus10020798 [exp]	6.8	0.9374
AT1G11300			protein serine/threonine kinas...		Lus10039731 [exp]	8.3	0.9359
AT2G39840		TOPP4	type one serine/threonine prot...		Lus10022019 [exp]	9.2	0.9313
AT3G48410			alpha/beta-Hydrolases superfam...		Lus10043449 [exp]	9.2	0.9317

Compare expression of checked genes

Lus10040207 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.