Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35450 49 / 7e-07 Disease resistance protein (CC-NBS-LRR class) family (.1) AT3G14470 47 / 4e-06 NB-ARC domain-containing disease resistance protein (.1) AT5G48620 46 / 6e-06 Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G43470 46 / 7e-06 HRT, RCY1, RPP8 RECOGNITION OF PERONOSPORA PARASITICA 8, RESISTANT TO CMV\(Y\) 1, HYPERSENSITIVE RESPONSE TO TCV, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT3G14460 43 / 6e-05 LRR and NB-ARC domains-containing disease resistance protein (.1) AT3G46530 43 / 8e-05 RPP13 RECOGNITION OF PERONOSPORA PARASITICA 13, NB-ARC domain-containing disease resistance protein (.1) AT3G46730 42 / 0.0001 NB-ARC domain-containing disease resistance protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028279 [exp] 169 / 9e-49 AT3G14470 337 / 5e-99 NB-ARC domain-containing disease resistance protein (.1) Lus10042117 [exp] 144 / 6e-40 AT3G14470 354 / 2e-105 NB-ARC domain-containing disease resistance protein (.1) Lus10005218 [exp] 77 / 2e-16 AT3G14470 379 / 2e-113 NB-ARC domain-containing disease resistance protein (.1) Lus10006794 [exp] 76 / 4e-16 AT3G14470 264 / 2e-78 NB-ARC domain-containing disease resistance protein (.1) Lus10011278 [exp] 67 / 4e-13 AT3G14470 356 / 1e-105 NB-ARC domain-containing disease resistance protein (.1) Lus10022351 [exp] 57 / 1e-09 AT3G14470 369 / 1e-108 NB-ARC domain-containing disease resistance protein (.1) Lus10002609 [exp] 53 / 2e-08 AT3G14470 364 / 9e-110 NB-ARC domain-containing disease resistance protein (.1) Lus10022792 [exp] 52 / 6e-08 AT3G14470 343 / 7e-102 NB-ARC domain-containing disease resistance protein (.1) Lus10003571 [exp] 52 / 7e-08 AT3G14470 363 / 6e-110 NB-ARC domain-containing disease resistance protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G275800 [exp] 77 / 2e-16 AT3G14470 345 / 3e-100 NB-ARC domain-containing disease resistance protein (.1) Potri.006G271800 [exp] 75 / 7e-16 AT3G14470 345 / 7e-102 NB-ARC domain-containing disease resistance protein (.1) Potri.006G272066 [exp] 74 / 2e-15 AT3G14470 299 / 2e-85 NB-ARC domain-containing disease resistance protein (.1) Potri.006G273900 [exp] 71 / 2e-14 AT3G14470 364 / 1e-108 NB-ARC domain-containing disease resistance protein (.1) Potri.017G140132 [exp] 66 / 9e-13 AT3G14470 292 / 1e-84 NB-ARC domain-containing disease resistance protein (.1) Potri.017G143820 [exp] 66 / 1e-12 AT3G14470 316 / 3e-93 NB-ARC domain-containing disease resistance protein (.1) Potri.004G076700 [exp] 62 / 2e-11 AT3G14470 143 / 4e-35 NB-ARC domain-containing disease resistance protein (.1) Potri.017G143700 [exp] 62 / 2e-11 AT3G14470 286 / 2e-82 NB-ARC domain-containing disease resistance protein (.1) Potri.017G143433 [exp] 61 / 4e-11 AT3G14470 321 / 1e-94 NB-ARC domain-containing disease resistance protein (.1) Potri.017G121700 [exp] 57 / 8e-10 AT3G14470 461 / 2e-144 NB-ARC domain-containing disease resistance protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040208 pacid=23174066 polypeptide=Lus10040208 locus=Lus10040208.g ID=Lus10040208.BGIv1.0 annot-version=v1.0 ATGGCTGCTGCTTCTGTCTTCAGGGTTGGCAAAACAGTTCTGAAGAAACTGGGTCCTCTCATCCAACAAGAGGCTTCCTCACTATGGACTCTTCGAGCAG AGCTCGAGAAGCTGAAAGGCACGATGAGTGCCATTCAGGCTCTCCTCCTCGACGTGGAGGAGAAGCACGAACACAGTCATCAAGTCAAAGACTGGCTCGA GAAGCTGACAGTCTTACTGTTCGATGCTGAGGATCTGCTCGACGATGTTGCTACTGAAGATTTGCGCGCAACTCCACCTCATGATGATAATGACTTGAGA TGCACGACGTGTGAACTTCGATTTGGAGAAATGGAGCGTTCTAAAATCCGCCTCGCGAGAGGTGGCCCCACCCGAAGCAAGATCCTCGTCACTACGAGAT TCGAGAATTTCGCAGAGTCGATGAGGAATCGTGGTTCTCCCGCGCCTTACACTCTGCCCGGTCTATCTCCTTCCCTGTCGTGGTCATTGGTTATGAAGGT AGCATTGGCATCATCATCATCAAATGAAGAGAGTATACAAAACATAACAGACCAAGAATAA
AA sequence Show only first row Show all	>Lus10040208 pacid=23174066 polypeptide=Lus10040208 locus=Lus10040208.g ID=Lus10040208.BGIv1.0 annot-version=v1.0 MAAASVFRVGKTVLKKLGPLIQQEASSLWTLRAELEKLKGTMSAIQALLLDVEEKHEHSHQVKDWLEKLTVLLFDAEDLLDDVATEDLRATPPHDDNDLR CTTCELRFGEMERSKIRLARGGPTRSKILVTTRFENFAESMRNRGSPAPYTLPGLSPSLSWSLVMKVALASSSSNEESIQNITDQE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14470			NB-ARC domain-containing disea...		Lus10040208 [exp]	0	1
AT5G51100		FSD2	Fe superoxide dismutase 2 (.1)		Lus10003430 [exp]	6.5	0.6928
AT2G38940		PHT1;4, ATPT2	ARABIDOPSIS THALIANA PHOSPHATE...		Lus10014754 [exp]	14.0	0.6182
AT5G15290		CASP5	Casparian strip membrane domai...		Lus10033007 [exp]	14.8	0.6968
AT1G32450		NRT1.5	nitrate transporter 1.5 (.1)		Lus10000792 [exp]	26.8	0.6579
					Lus10029354 [exp]	26.9	0.6757
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10027430 [exp]	31.4	0.6038
AT1G77410		BGAL16	beta-galactosidase 16 (.1)		Lus10008259 [exp]	44.8	0.6516
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10025408 [exp]	52.5	0.5779
					Lus10005187 [exp]	53.0	0.5779
AT4G33985			Protein of unknown function (D...		Lus10002400 [exp]	53.4	0.6113

Compare expression of checked genes

Lus10040208 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.