Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40020 57 / 1e-09 Nucleolar histone methyltransferase-related protein (.1.2.3) AT1G45248 52 / 1e-08 Nucleolar histone methyltransferase-related protein (.1.2.3.4.5) AT1G04050 42 / 0.0003 SDG13, SUVR1 SET DOMAIN PROTEIN 13, homolog of SU(var)3-9 1 (.1) AT5G43990 41 / 0.0007 SDG18, SUVR2 SET DOMAIN PROTEIN 18, SET-domain containing protein lysine methyltransferase family protein (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028278 [exp] 233 / 5e-72 AT2G38120 801 / 0.0 WAVY ROOTS 5, MODIFIER OF ARF7/NPH4 PHENOTYPES 1, AUXIN RESISTANT 1, Transmembrane amino acid transporter family protein (.1) Lus10022879 [exp] 51 / 6e-07 AT5G43990 455 / 2e-149 SET DOMAIN PROTEIN 18, SET-domain containing protein lysine methyltransferase family protein (.1.2.3.4.5) Lus10024946 [exp] 50 / 8e-07 AT5G43990 488 / 7e-163 SET DOMAIN PROTEIN 18, SET-domain containing protein lysine methyltransferase family protein (.1.2.3.4.5) Lus10022878 [exp] 43 / 0.0001 AT5G43990 110 / 2e-26 SET DOMAIN PROTEIN 18, SET-domain containing protein lysine methyltransferase family protein (.1.2.3.4.5) Lus10024947 [exp] 43 / 0.0002 AT5G43990 100 / 4e-23 SET DOMAIN PROTEIN 18, SET-domain containing protein lysine methyltransferase family protein (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G190800 [exp] 71 / 4e-14 AT2G40020 49 / 5e-07 Nucleolar histone methyltransferase-related protein (.1.2.3) Potri.014G192500 [exp] 44 / 7e-05 AT5G43990 531 / 3e-178 SET DOMAIN PROTEIN 18, SET-domain containing protein lysine methyltransferase family protein (.1.2.3.4.5) Potri.009G138600 [exp] 42 / 0.0003 AT3G04380 427 / 2e-144 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2) Potri.002G257400 [exp] 42 / 0.0006 AT5G43990 524 / 8e-176 SET DOMAIN PROTEIN 18, SET-domain containing protein lysine methyltransferase family protein (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0214 [flax] [poplar] UBA PF10440 [flax] [poplar] WIYLD Ubiquitin-binding WIYLD domain
Representative CDS sequence Show only first row Show all	>Lus10040211 pacid=23174033 polypeptide=Lus10040211 locus=Lus10040211.g ID=Lus10040211.BGIv1.0 annot-version=v1.0 ATGGCGCCTAGAGGACGCCCGACTCCATTTCAGGTGGGTCTGAAGCGAAGGGATGCTGCAATTGCTGCAATGTTGGAACTAGGGTTCTCCCGGAAACTGA TTAACCAAACCATCAAGGAGCTCTTGCAAGTTTACGGGGGCGATGAAGGATGGAGATTCATAGAGATGGATTCCTATAGAGTACTGATTGACGCCATTCT GGAGAAAGGCGAACCAGAGGCTGCTGCATCTTCACAGGTTGATGATGAAGGAGTGGAGAACAGTCATCGACAATCTGAAGTTGGGTCCTCTAGTGAAACA CTTGCACCTGTTGTTGACACATACACTGCCCCGTTACCATCACTGGTTGGTGACGGTCTGGACAGCGGGTCGCGGGTCGAGGCAGTTCAGAACCCTCCAT TGATTATTCCTCAATCTGCCGAAGAAGGAAAAGGTGCTGGCGAACCAGACAACGGGACCCCTAGCTCCAAGTTGCAGCCACCTCCATTCAGTAAGAGTGA ACGCATCAGTGAACAACCGGCTCGTCGTGTATCATGTGTCAGTCCATGCAATGACTTCACACTCCTTGGTGAAGAACTCGAAGGTGCTGGCAAACCAGAC AACACCGATGGGGATGCAGACAAAGGAACTCCAAACCCCGAGAGTCCATGTGTCACTGAACAGCTGGCTCCCTATGTACCTCCGCATAGGAATCGTAGAC CTTTCCACGGCTTGGTCAGGGACAATAATGATGATGAGTCGGACCTTGTGAGGCTGGAGCGAGCCCCGTTGCCTGAGGCATTGTTGAAGATATTGGGTAG GACCGTCCCTCTCAAGCGTAAGAGTAGTAGGTGGGATGTTAAACCGCAACTAGTGAAGGGATTTGCAGCAGGATAG
AA sequence Show only first row Show all	>Lus10040211 pacid=23174033 polypeptide=Lus10040211 locus=Lus10040211.g ID=Lus10040211.BGIv1.0 annot-version=v1.0 MAPRGRPTPFQVGLKRRDAAIAAMLELGFSRKLINQTIKELLQVYGGDEGWRFIEMDSYRVLIDAILEKGEPEAAASSQVDDEGVENSHRQSEVGSSSET LAPVVDTYTAPLPSLVGDGLDSGSRVEAVQNPPLIIPQSAEEGKGAGEPDNGTPSSKLQPPPFSKSERISEQPARRVSCVSPCNDFTLLGEELEGAGKPD NTDGDADKGTPNPESPCVTEQLAPYVPPHRNRRPFHGLVRDNNDDESDLVRLERAPLPEALLKILGRTVPLKRKSSRWDVKPQLVKGFAAG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40020			Nucleolar histone methyltransf...		Lus10040211 [exp]	0	1
AT5G14210			Leucine-rich repeat protein ki...		Lus10032059 [exp]	5.1	0.7936
AT1G20650		ASG5	ALTERED SEED GERMINATION 5, Pr...		Lus10016021 [exp]	9.6	0.7564
AT2G41990			unknown protein		Lus10003341 [exp]	11.8	0.7818
AT5G43990		SDG18, SUVR2	SET DOMAIN PROTEIN 18, SET-dom...		Lus10022878 [exp]	14.0	0.7782
AT4G17150			alpha/beta-Hydrolases superfam...		Lus10039125 [exp]	15.9	0.7674
AT3G11470			4'-phosphopantetheinyl transfe...		Lus10008521 [exp]	17.5	0.7906
AT5G54980			Uncharacterised protein family...		Lus10034604 [exp]	18.6	0.7831
AT5G14210			Leucine-rich repeat protein ki...		Lus10032058 [exp]	23.4	0.7803
AT2G03810			18S pre-ribosomal assembly pro...		Lus10004632 [exp]	24.0	0.7461
AT4G18240		ATSS4, SSIV	ARABIDOPSIS THALIANA STARCH SY...		Lus10028133 [exp]	26.3	0.7828

Compare expression of checked genes

Lus10040211 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.