Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05760 382 / 4e-133 ATSYP31, ATSED5, SYP31 T-SNARE SED 5, syntaxin of plants 31 (.1) AT3G24350 270 / 6e-89 ATSYP32, SYP32 syntaxin of plants 32 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028277 [exp] 636 / 0 AT5G05760 417 / 7e-147 T-SNARE SED 5, syntaxin of plants 31 (.1) Lus10033080 [exp] 280 / 2e-92 AT3G24350 432 / 1e-152 syntaxin of plants 32 (.1.2) Lus10017741 [exp] 268 / 2e-88 AT3G24350 410 / 2e-144 syntaxin of plants 32 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G191100 [exp] 482 / 3e-172 AT5G05760 395 / 8e-138 T-SNARE SED 5, syntaxin of plants 31 (.1) Potri.006G157000 [exp] 256 / 3e-83 AT3G24350 294 / 3e-98 syntaxin of plants 32 (.1.2) Potri.018G072400 [exp] 247 / 7e-80 AT3G24350 332 / 3e-113 syntaxin of plants 32 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0445 [flax] [poplar] SNARE-fusion PF00804 [flax] [poplar] Syntaxin Syntaxin CL0445 [flax] [poplar] PF05739 [flax] [poplar] SNARE SNARE domain
Representative CDS sequence Show only first row Show all	>Lus10040213 pacid=23173966 polypeptide=Lus10040213 locus=Lus10040213.g ID=Lus10040213.BGIv1.0 annot-version=v1.0 ATGGCATCCACTTACAGAGATCGGACGGCGGAATTCCGATCACTCACCCAAACGCTTACCAAGATCGGAGGGATCAAACCCGATCGACCTCAATCACAGG AAACTGATCCTTTTCTGCCTTCAAACCAACACTCTTCGTCGCTGTCTTACAGATCCGAGTTCAACAAGAAGGCTTCTTTGATCGGGCTCGGAGTTCATGA AGCCTCCCAGAAAGTCGCTAGGCTTTCCAAACTGGCAAAGAAGTCGTCGATGTTTGATGACCCTACAGTTGAGATCCAAGAACTGACTGTGCTTATAAAG AATGATATTACAGCTTTGAACTCAGCTCTTACAGATCTTCAGACACTTCAGAGGATGGAGATAGCTGATGGGAACTACTCTGAGGATAGAGTGGTTCATT CCACGGCAGTTTGTGATGACTTGAAGAACAAGCTAATGGGGACTACTAAACAACTTCAAGATGTGTTGACCACTAGAACAGAGAATATCAAAGCTCATGA GAACAGGAAGCAGATATTTTCTGCTAATGCTTCAAGAGAAAACCCTTTTGTTCGTCCTGCAAAACCCTTGGTCGAACCACCTCCTTGGTCAAGTTCGACA AACCAATTTGACCCTTTACAGCCATCCGCGTTACCATCAAATGGCATTCAAGTAGGCAGCCAATTGAGACGGAGGCCAGGGGTTGACAATGCTACTTCGC AACAGATGGAAATGGCCATGTTACAAGAAGTAGTCCCTAGGCAGGATAGTTTGACTCAAAGTCGAGCATCTGCTCTTCACAACGTGGAATCAACCATATC AGAACTTGGCGGGATCTTCACACATTTGGCTACCATGGTTGCGCAACAAGGGGAGCTGGCAATCAGAATTGATGACAACATGGATGAATCTTTGTCCAAC GTCGAAGGTGCTCGCAGTGCCCTGCTGCAACATCTTAACTCAATATCATCAAATAGGTGGCTTCTTATTAAGATCTTCGCTATCATAATATTCTTCTTGA TGGTCTTCATCTTCTTTGTAGCTTGA
AA sequence Show only first row Show all	>Lus10040213 pacid=23173966 polypeptide=Lus10040213 locus=Lus10040213.g ID=Lus10040213.BGIv1.0 annot-version=v1.0 MASTYRDRTAEFRSLTQTLTKIGGIKPDRPQSQETDPFLPSNQHSSSLSYRSEFNKKASLIGLGVHEASQKVARLSKLAKKSSMFDDPTVEIQELTVLIK NDITALNSALTDLQTLQRMEIADGNYSEDRVVHSTAVCDDLKNKLMGTTKQLQDVLTTRTENIKAHENRKQIFSANASRENPFVRPAKPLVEPPPWSSST NQFDPLQPSALPSNGIQVGSQLRRRPGVDNATSQQMEMAMLQEVVPRQDSLTQSRASALHNVESTISELGGIFTHLATMVAQQGELAIRIDDNMDESLSN VEGARSALLQHLNSISSNRWLLIKIFAIIIFFLMVFIFFVA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05760		ATSYP31, ATSED5...	T-SNARE SED 5, syntaxin of pla...		Lus10040213 [exp]	0	1
AT1G22040			Galactose oxidase/kelch repeat...		Lus10025357 [exp]	3.9	0.9271
AT4G19860			alpha/beta-Hydrolases superfam...		Lus10018310 [exp]	5.1	0.9247
AT1G21780			BTB/POZ domain-containing prot...		Lus10042717 [exp]	5.5	0.9162
AT2G20740			Tetraspanin family protein (.1...		Lus10018584 [exp]	5.5	0.9125
AT4G18880	HSF	AT-HSFA4A ,HSF ...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10015237 [exp]	8.4	0.9134
AT5G39510		ZIG1, SGR4, ATV...	SHOOT GRAVITROPSIM 4, VESICLE ...		Lus10034696 [exp]	9.8	0.9245
AT4G36195			Serine carboxypeptidase S28 fa...		Lus10028365 [exp]	12.0	0.9087
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10022189 [exp]	13.3	0.9059
AT3G53490			unknown protein		Lus10003989 [exp]	13.8	0.9070
AT3G22290			Endoplasmic reticulum vesicle ...		Lus10023828 [exp]	13.9	0.9229

Compare expression of checked genes

Lus10040213 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.