Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40000 511 / 1e-180 ATHSPRO2 ARABIDOPSIS ORTHOLOG OF SUGAR BEET HS1 PRO-1 2, ortholog of sugar beet HS1 PRO-1 2 (.1) AT3G55840 474 / 5e-166 Hs1pro-1 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028275 [exp] 881 / 0 AT2G40000 526 / 0.0 ARABIDOPSIS ORTHOLOG OF SUGAR BEET HS1 PRO-1 2, ortholog of sugar beet HS1 PRO-1 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G191300 [exp] 683 / 0 AT2G40000 505 / 1e-177 ARABIDOPSIS ORTHOLOG OF SUGAR BEET HS1 PRO-1 2, ortholog of sugar beet HS1 PRO-1 2 (.1) Potri.008G066000 [exp] 670 / 0 AT2G40000 532 / 0.0 ARABIDOPSIS ORTHOLOG OF SUGAR BEET HS1 PRO-1 2, ortholog of sugar beet HS1 PRO-1 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0380 [flax] [poplar] IDO-like PF07014 [flax] [poplar] Hs1pro-1_C Hs1pro-1 protein C-terminus CL0380 [flax] [poplar] PF07231 [flax] [poplar] Hs1pro-1_N Hs1pro-1 N-terminus
Representative CDS sequence Show only first row Show all	>Lus10040215 pacid=23174038 polypeptide=Lus10040215 locus=Lus10040215.g ID=Lus10040215.BGIv1.0 annot-version=v1.0 ATGGTTGATCTACACTGGAAAGCCAAGATGGTCTCCTCCGATCTCCCAAACACCCTGCAAGTACAGATTCCGACCCCGGCTCCTTCTTTCCGAGGTGTCA CCTCCATCTCCCCTGTCTCCGCCTCCGACGCCGCCTGCTCCTCCTACGAGCAGTACCTCCGTTTACCGGAGCTCAGGAAGCTCTGGTCAGACCGGCACTT CCCTGAGTGGACAAGCGAACCGATTCTCAAACCGGCTCTCCAAGCTCTGGAGATCACCTTCCGGTTCGTCTCAACTGTTCTGTCCGACCCGAGACCGTAC GCCAACAAGAGGGAGTGGAAGCGGCGACTTGAGTCGCTTTCCACAGCTCAGATTCAGCTCATCGCCGTCTTGTGCGAGGATGACGCCGGCGGCGTCAGCG CTCCGATCGTCGATCTTGGATCGACGAGCGGAGTTCTGGAGAGGGAGAGCAGCTACGCGGAGGTGTGGAAACTCGCCGGCGATGGAGTAGCCGTGAATCG AGCTAGCGAGGCGAGCCTTCTGCCTCCGTTGGCGACGTGGCAGACGTCGGAGGATGTGGCGCAGAAGATTATGTACTCGATCGAGTGCGAGATGAGGCGG TGCCCGTACACTCTTGGTCTGGGAGAGCCGAACCTAGCGGGGAAGCCGAACCTGGACTACGACGCCGTTTGCAGGCCGAGCGACGTCCATTCCTTGAAGA GGAATCCGTACGACCACGTCGAGAACCAGGAGAATCAGAGTCTGTACACGGCGCACCAGATTCTCGAATCGTGGATCCAGGTTGCTAAACAGGTCATAAT CCGGCTGGCGGAGCGAATCGAGATCGGAGATTTCGAATCAGCGGCGAACGATTGCTACTTCCTGGAACGGATCTGGAAGCTCCTAGCCGAGATAGAGGAT CTGCACTTATTAATGGATCCAGACGATTTCCTCAAGCTGAAGAACCAGCTATCAATCAAATCGGCGACAGAGAAGGAGCCGTTCTGTTTCCGATCGAGAA CTCTCGTCGACATCACCAAATCTTGCAAGGAGCTGAAGCATAAAGTGCCGGAGATTCTAGGGGTGGAGGTGGATCCGAAGGGAGGGCCGAGGATTCAGGA GGCGGCGATGAAGCTGTACAGGGAGAAGGCAGATTGGGAGAAGATACAGATACTGCAAGGGTTGCAGGCGGTGGAGGCGGCGCTGAAGAAATTCTTCTAC GCATACAAGCAGGTGTTGGTGGCGGTGATGGGGAGCTTGGAAGCGAAGGGGAATAACTCGGCGGCGAGTTCAGAGTCGTCGTGCGACTCGTTGACTCGGT TGTTTCTGGAGCCGACGTATTTTCCGAGCTTGGATGCTGCGAAGACGTTTCTGGGACAGTTCCACGAACGGAAACGAAGGCAATAG
AA sequence Show only first row Show all	>Lus10040215 pacid=23174038 polypeptide=Lus10040215 locus=Lus10040215.g ID=Lus10040215.BGIv1.0 annot-version=v1.0 MVDLHWKAKMVSSDLPNTLQVQIPTPAPSFRGVTSISPVSASDAACSSYEQYLRLPELRKLWSDRHFPEWTSEPILKPALQALEITFRFVSTVLSDPRPY ANKREWKRRLESLSTAQIQLIAVLCEDDAGGVSAPIVDLGSTSGVLERESSYAEVWKLAGDGVAVNRASEASLLPPLATWQTSEDVAQKIMYSIECEMRR CPYTLGLGEPNLAGKPNLDYDAVCRPSDVHSLKRNPYDHVENQENQSLYTAHQILESWIQVAKQVIIRLAERIEIGDFESAANDCYFLERIWKLLAEIED LHLLMDPDDFLKLKNQLSIKSATEKEPFCFRSRTLVDITKSCKELKHKVPEILGVEVDPKGGPRIQEAAMKLYREKADWEKIQILQGLQAVEAALKKFFY AYKQVLVAVMGSLEAKGNNSAASSESSCDSLTRLFLEPTYFPSLDAAKTFLGQFHERKRRQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40000		ATHSPRO2	ARABIDOPSIS ORTHOLOG OF SUGAR ...		Lus10040215 [exp]	0	1
AT2G40000		ATHSPRO2	ARABIDOPSIS ORTHOLOG OF SUGAR ...		Lus10028275 [exp]	1.0	0.9510
AT3G07790			DGCR14-related (.1)		Lus10012321 [exp]	4.9	0.8630
AT1G09070		(AT)SRC2, (AT)S...	soybean gene regulated by cold...		Lus10004500 [exp]	5.0	0.8887
AT5G03230			Protein of unknown function, D...		Lus10026507 [exp]	5.1	0.8613
AT5G11070			unknown protein		Lus10001943 [exp]	5.5	0.8756
AT1G09070		(AT)SRC2, (AT)S...	soybean gene regulated by cold...		Lus10029901 [exp]	6.0	0.9014
AT3G57450			unknown protein		Lus10031071 [exp]	6.3	0.8957
AT4G29780			unknown protein		Lus10011946 [exp]	7.9	0.9086
AT4G00300			fringe-related protein (.1.2)		Lus10018823 [exp]	15.5	0.8864
AT1G74450			Protein of unknown function (D...		Lus10042809 [exp]	15.6	0.8767

Compare expression of checked genes

Lus10040215 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.