Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55830 471 / 3e-168 EPC1 ECTOPICALLY PARTING CELLS, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT5G04500 108 / 5e-26 glycosyltransferase family protein 47 (.1) AT1G80290 92 / 8e-21 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028274 [exp] 668 / 0 AT3G55830 463 / 5e-165 ECTOPICALLY PARTING CELLS, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10031680 [exp] 289 / 2e-96 AT3G55830 273 / 3e-90 ECTOPICALLY PARTING CELLS, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10027392 [exp] 213 / 8e-67 AT3G55830 201 / 2e-62 ECTOPICALLY PARTING CELLS, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10037920 [exp] 113 / 2e-27 AT5G04500 1032 / 0.0 glycosyltransferase family protein 47 (.1) Lus10038646 [exp] 113 / 2e-27 AT5G04500 1009 / 0.0 glycosyltransferase family protein 47 (.1) Lus10020174 [exp] 101 / 2e-24 AT1G80290 391 / 1e-136 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G065800 [exp] 551 / 0 AT3G55830 470 / 7e-168 ECTOPICALLY PARTING CELLS, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.010G191700 [exp] 537 / 0 AT3G55830 439 / 1e-155 ECTOPICALLY PARTING CELLS, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.010G232700 [exp] 107 / 1e-25 AT5G04500 987 / 0.0 glycosyltransferase family protein 47 (.1) Potri.008G028900 [exp] 104 / 1e-24 AT5G04500 992 / 0.0 glycosyltransferase family protein 47 (.1) Potri.006G278400 [exp] 92 / 5e-21 AT1G80290 352 / 2e-121 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF09258 [flax] [poplar] Glyco_transf_64 Glycosyl transferase family 64 domain
Representative CDS sequence Show only first row Show all	>Lus10040216 pacid=23173851 polypeptide=Lus10040216 locus=Lus10040216.g ID=Lus10040216.BGIv1.0 annot-version=v1.0 ATGAGAGGGAGCTTGCTGATGAACCGCCGCGGATTGCAGAGATTCCGGCAGCTTGCGTTTACATCCACCGGATCGGCGAAGATCAAGCTACTGCTCGGGT GTTGCATCGTTTTCACACTGCTAGCTTTGCCAGGATGGGCGTCCAAGTTTATGGGATGGAGTAATCTCTCTGCTTCCGATGATTTTATCCAAGCGCCAGG GAAAGGCTATGCTATTGTTATGAACACGTGGAAAAGATACGATCTGTTGAAGCAATCCATTGGTCACTATGCATCATGCTCCGAGCTTGATTCGATACAT ATTGTGTGGAGTGAACCTGATCCTCCTTCTGATTCTCTTATTACACATCTAAACCGTATCCTGCAGTCAAAGTCAAGAGGACTGAGGAAAGTTGAACTTA AATTTGACATCAACAAGGAAGATAGTTTGAACAATAGATTCAAAGAGATTAAGGATTTGAAGACGGATGCTGTCTTCTCAATTGATGATGATATCATATT TCCCTGCTCGTCAGTGGAGTTTGCTTTCCACGTTTGGCAAAGTGCACCGGATACCATGGTGGGATTTGTGCCACGCGCCCATTGGGTCGAACCAGCGCAT GATAAGACTAAGTACTATACGTATGGTGGATGGTGGTCTGTTTGGTGGACGGGTAGTTACAGTATGGTTCTTTCAAAAGCTGCATTTTTCCATAAAAAGT ATCTTAGTCTCTACACAAATGAGATGCCAGCGTCACTAAAGGAATACACAACCAAGATCAGGAATTGTGAAGATATTGCCATGTCCTTTCTCGTAGCAAA TGTAACTGGTGCGCCACCTATATGGGTCAAGGGCAAAATATTCGAGATTGGTTCCACGGGGATCAGTAGCTTGGGCGGTCATAGCGAAAGAAGAAGTCAG TGTATCAACAGATTTGTAGCCGAGTTTGGACGAATGCCGTTGGTATCCACAACAGTGAAGGCAGTTGATAGCCGCCAGAGCTGGTTTTGGTGA
AA sequence Show only first row Show all	>Lus10040216 pacid=23173851 polypeptide=Lus10040216 locus=Lus10040216.g ID=Lus10040216.BGIv1.0 annot-version=v1.0 MRGSLLMNRRGLQRFRQLAFTSTGSAKIKLLLGCCIVFTLLALPGWASKFMGWSNLSASDDFIQAPGKGYAIVMNTWKRYDLLKQSIGHYASCSELDSIH IVWSEPDPPSDSLITHLNRILQSKSRGLRKVELKFDINKEDSLNNRFKEIKDLKTDAVFSIDDDIIFPCSSVEFAFHVWQSAPDTMVGFVPRAHWVEPAH DKTKYYTYGGWWSVWWTGSYSMVLSKAAFFHKKYLSLYTNEMPASLKEYTTKIRNCEDIAMSFLVANVTGAPPIWVKGKIFEIGSTGISSLGGHSERRSQ CINRFVAEFGRMPLVSTTVKAVDSRQSWFW

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55830		EPC1	ECTOPICALLY PARTING CELLS, Nuc...		Lus10040216 [exp]	0	1
AT1G60780		HAP13	HAPLESS 13, Clathrin adaptor c...		Lus10026688 [exp]	3.3	0.8065
AT5G03470		ATB' ALPHA, ATB...	Protein phosphatase 2A regulat...		Lus10023920 [exp]	4.9	0.8057
AT5G03470		ATB' ALPHA, ATB...	Protein phosphatase 2A regulat...		Lus10014417 [exp]	5.3	0.7981
AT3G59350			Protein kinase superfamily pro...		Lus10025498 [exp]	8.8	0.7981
AT3G59350			Protein kinase superfamily pro...		Lus10025496 [exp]	9.5	0.7839
AT4G19180			GDA1/CD39 nucleoside phosphata...		Lus10027686 [exp]	11.0	0.7600
AT1G18470			Transmembrane Fragile-X-F-asso...		Lus10021710 [exp]	13.0	0.7662
AT1G58350		ZW18	Putative serine esterase fami...		Lus10036214 [exp]	13.1	0.7636
AT3G45600		TET3	tetraspanin3 (.1)		Lus10023338 [exp]	16.5	0.7685
AT1G51590		MNS1, MANIB	ALPHA-MANNOSIDASE IB, alpha-ma...		Lus10034820 [exp]	18.3	0.7812

Compare expression of checked genes

Lus10040216 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.