Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39990 399 / 5e-141 AteIF3f, EIF2 Arabidopsis thaliana eukaryotic translation initiation factor 3 subunit F, eukaryotic translation initiation factor 2 (.1) AT3G11270 116 / 2e-30 MEE34 maternal effect embryo arrest 34, Mov34/MPN/PAD-1 family protein (.1.2) AT5G05780 108 / 1e-27 RPN8A, AE3, ATHMOV34 ASYMMETRIC LEAVES ENHANCER 3, RP non-ATPase subunit 8A (.1.2) AT5G56280 74 / 6e-15 CSN6A COP9 signalosome subunit 6A (.1) AT4G26430 67 / 2e-12 CSN6B COP9 signalosome subunit 6B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028272 [exp] 545 / 0 AT2G39990 431 / 9e-154 Arabidopsis thaliana eukaryotic translation initiation factor 3 subunit F, eukaryotic translation initiation factor 2 (.1) Lus10035522 [exp] 112 / 1e-28 AT5G05780 550 / 0.0 ASYMMETRIC LEAVES ENHANCER 3, RP non-ATPase subunit 8A (.1.2) Lus10027775 [exp] 111 / 1e-28 AT5G05780 555 / 0.0 ASYMMETRIC LEAVES ENHANCER 3, RP non-ATPase subunit 8A (.1.2) Lus10027082 [exp] 67 / 2e-12 AT5G56280 527 / 0.0 COP9 signalosome subunit 6A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G192000 [exp] 485 / 4e-175 AT2G39990 431 / 7e-154 Arabidopsis thaliana eukaryotic translation initiation factor 3 subunit F, eukaryotic translation initiation factor 2 (.1) Potri.008G065500 [exp] 330 / 9e-115 AT2G39990 306 / 3e-105 Arabidopsis thaliana eukaryotic translation initiation factor 3 subunit F, eukaryotic translation initiation factor 2 (.1) Potri.008G065300 [exp] 119 / 1e-31 AT5G05780 568 / 0.0 ASYMMETRIC LEAVES ENHANCER 3, RP non-ATPase subunit 8A (.1.2) Potri.010G192200 [exp] 118 / 3e-31 AT5G05780 560 / 0.0 ASYMMETRIC LEAVES ENHANCER 3, RP non-ATPase subunit 8A (.1.2) Potri.008G065200 [exp] 112 / 4e-29 AT5G05780 568 / 0.0 ASYMMETRIC LEAVES ENHANCER 3, RP non-ATPase subunit 8A (.1.2) Potri.011G169900 [exp] 69 / 3e-13 AT5G56280 511 / 0.0 COP9 signalosome subunit 6A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0366 [flax] [poplar] JAB PF01398 [flax] [poplar] JAB JAB1/Mov34/MPN/PAD-1 ubiquitin protease
Representative CDS sequence Show only first row Show all	>Lus10040218 pacid=23174135 polypeptide=Lus10040218 locus=Lus10040218.g ID=Lus10040218.BGIv1.0 annot-version=v1.0 ATGGCGGCAGCGAGCGAGCAGGCAGTACTTCAATTCGCGCCGACGGCTTCGTCGAACACCTTCTCGGCGAAGGTGCATCCTCTGGTCATCTTCAACATTT GTGACTGCTACGTGAGACGGCCGGACCAATCTGAGCGCGTAATTGGCACCTTGCTCGGCTCTGTTTTGCCCGATGGCACCGTTGACATCCGTAACTCTTT CGCCGTTCCTCACAATGAGTCTTCCGACCAGGTTGCATTGGATATTGCTTACCATACTACCATGTTGGCCTCCCACCAAAAAGTGAACCCCAAGGAAGTC ATTGTTGGCTGGTATTCAACTGGTTTAGGAGTCACTGGTGGCAGTGCTCTCATTCACGACTTCTATTCCGATGAAGTTCCCAACCCTGTTCATCTAACGG TTGACACTGGATTCAGAAATGGAGAGCCTGCAATTAAAGCATATGTGTCGGTGAATTTGTCTCTTGGGAGCACTCAGTTAGCGGCACAATTTCAAGAAAT CCCACTTGATCTTCGCATGATCGAAGCAGAGAGGATTGGATTTGACATTCTGAAGACGACAATGGTCGACAAGCTGCCAACTGATTTGGAAGGAATGGAA GCCTCGATGCAGCACCTACTTGCACTGATCGATGATATCTATAAATATGTTGATGATGTGGTGCAAGGTCATACTGCTCCGGATAATAACGTAGGGCGAA TGATATCAGAAATCGTCGCATCGATTCCGAAACTTTCACCGGCTGTGTTGGATAAGCTTGTCAATGACAACATGCAGGACCATTTGCTGTTGCTATATTT GTCAAGCATAACAAGGACTCAGCTGAGCTTAGCAGAGAAATTGAACACAGCTGCTCAGATCATCTAG
AA sequence Show only first row Show all	>Lus10040218 pacid=23174135 polypeptide=Lus10040218 locus=Lus10040218.g ID=Lus10040218.BGIv1.0 annot-version=v1.0 MAAASEQAVLQFAPTASSNTFSAKVHPLVIFNICDCYVRRPDQSERVIGTLLGSVLPDGTVDIRNSFAVPHNESSDQVALDIAYHTTMLASHQKVNPKEV IVGWYSTGLGVTGGSALIHDFYSDEVPNPVHLTVDTGFRNGEPAIKAYVSVNLSLGSTQLAAQFQEIPLDLRMIEAERIGFDILKTTMVDKLPTDLEGME ASMQHLLALIDDIYKYVDDVVQGHTAPDNNVGRMISEIVASIPKLSPAVLDKLVNDNMQDHLLLLYLSSITRTQLSLAEKLNTAAQII

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39990		AteIF3f, EIF2	Arabidopsis thaliana eukaryoti...		Lus10040218 [exp]	0	1
AT5G11200			DEAD/DEAH box RNA helicase fam...		Lus10002021 [exp]	1.0	0.9419
AT5G50320		EAST1, AtELP3, ...	HISTONE ACETYLTRANSFERASE OF T...		Lus10014792 [exp]	4.5	0.9295
AT2G40360			Transducin/WD40 repeat-like su...		Lus10023107 [exp]	4.7	0.9329
AT5G25757			RNA polymerase I-associated fa...		Lus10037897 [exp]	6.3	0.9326
AT5G61770		PPAN	PETER PAN-like protein (.1.2.3...		Lus10030190 [exp]	6.9	0.9203
AT4G15950		RDM2, NRPE4, NR...	RNA-DIRECTED DNA METHYLATION 2...		Lus10039097 [exp]	11.4	0.9040
AT5G58230		MSI1, MEE70, AT...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10020916 [exp]	12.4	0.9090
AT1G48830			Ribosomal protein S7e family p...		Lus10028789 [exp]	12.6	0.9327
AT2G32415			Polynucleotidyl transferase, r...		Lus10015114 [exp]	14.1	0.9080
AT4G14850		MEF11, LOI1	lovastatin insensitive 1, Pent...		Lus10010551 [exp]	15.0	0.9038

Compare expression of checked genes

Lus10040218 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.