Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39980 617 / 0 HXXXD-type acyl-transferase family protein (.1) AT5G01210 541 / 0 HXXXD-type acyl-transferase family protein (.1) AT5G42830 280 / 3e-89 HXXXD-type acyl-transferase family protein (.1) AT5G07870 271 / 1e-85 HXXXD-type acyl-transferase family protein (.1) AT5G07850 262 / 2e-82 HXXXD-type acyl-transferase family protein (.1) AT5G07860 261 / 4e-82 HXXXD-type acyl-transferase family protein (.1) AT5G67150 221 / 7e-67 HXXXD-type acyl-transferase family protein (.1) AT3G50280 212 / 3e-63 HXXXD-type acyl-transferase family protein (.1) AT3G50270 205 / 9e-61 HXXXD-type acyl-transferase family protein (.1) AT5G23940 195 / 2e-56 PEL3, DCR, EMB3009 PERMEABLE LEAVES3, EMBRYO DEFECTIVE 3009, DEFECTIVE IN CUTICULAR RIDGES, HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028267 [exp] 929 / 0 AT2G39980 631 / 0.0 HXXXD-type acyl-transferase family protein (.1) Lus10035519 [exp] 437 / 2e-151 AT5G01210 520 / 0.0 HXXXD-type acyl-transferase family protein (.1) Lus10027779 [exp] 291 / 2e-95 AT5G01210 350 / 7e-119 HXXXD-type acyl-transferase family protein (.1) Lus10031149 [exp] 238 / 5e-73 AT3G50280 305 / 3e-99 HXXXD-type acyl-transferase family protein (.1) Lus10024809 [exp] 224 / 1e-67 AT5G42830 442 / 8e-153 HXXXD-type acyl-transferase family protein (.1) Lus10031148 [exp] 216 / 1e-64 AT5G67150 284 / 5e-91 HXXXD-type acyl-transferase family protein (.1) Lus10041591 [exp] 213 / 3e-63 AT5G67150 347 / 2e-115 HXXXD-type acyl-transferase family protein (.1) Lus10027500 [exp] 206 / 1e-60 AT5G23940 571 / 0.0 PERMEABLE LEAVES3, EMBRYO DEFECTIVE 3009, DEFECTIVE IN CUTICULAR RIDGES, HXXXD-type acyl-transferase family protein (.1) Lus10039256 [exp] 199 / 7e-58 AT5G23940 576 / 0.0 PERMEABLE LEAVES3, EMBRYO DEFECTIVE 3009, DEFECTIVE IN CUTICULAR RIDGES, HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G192400 [exp] 662 / 0 AT2G39980 708 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.008G065000 [exp] 647 / 0 AT2G39980 705 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.016G112400 [exp] 563 / 0 AT5G01210 614 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.006G097500 [exp] 545 / 0 AT5G01210 633 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.014G025550 [exp] 311 / 1e-101 AT5G42830 579 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.014G025500 [exp] 301 / 1e-97 AT5G42830 576 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.014G025600 [exp] 294 / 9e-95 AT5G42830 565 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.003G057001 [exp] 260 / 8e-82 AT5G67150 275 / 3e-88 HXXXD-type acyl-transferase family protein (.1) Potri.003G057100 [exp] 259 / 1e-81 AT3G50280 303 / 4e-99 HXXXD-type acyl-transferase family protein (.1) Potri.003G057200 [exp] 259 / 2e-81 AT5G67150 297 / 1e-96 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10040222 pacid=23174004 polypeptide=Lus10040222 locus=Lus10040222.g ID=Lus10040222.BGIv1.0 annot-version=v1.0 ATGCCTGCCGCACCTTCAAACTCCTCAGCCGTCACTGTCCACTCGAAATGCACGGTGGTCCCTGACCAGAAATCCACCATGGCCGACCTCAAGCTCTCCG CCTCCGACCTCCCCATGCTCTCCTGCCATTACATCCAAAAGGGAGCTCTCTTCTCCAAACCTCAATTCCCTTTCTCATCTCTCTGCCTCCTCTTGAAATC CTCCCTCTCCCACACTCTTTCCTTCTTCCCGCCGCTCGCCGGCCGCCTCTCCACCGAATCCACCACCGCCGAAGTCTACATCACCTGCAACGACGCCGGC GCCGACTTCCTCCACGCCTCCGCCCTCTCAATTTCAGTCCTCGACATCATCGGCTCGGTCAGGGGACCCGAATTCGTCAACGGATTCTTCGCCATGGACC GCACCGTCAGCTACCAGGGTCACCACCGACCGATTTTATCCGTCCAGGTGACGGAGCTGGCTGACGGCGTCTTCGTTGGATGCTCCGTTAATCACTCCGT TACCGACGGCACCTCCTTCTGGAACTTCTTCAACACCTTTGCTCAGGTTTCCCGTGGCGTGAAATGCATATCTCGCCTCCCTGATTTCACGCGTGACGGC TCTTGCCCGCTGATGTCATCAGCCGTTCTGAAACTTCCCCCAGGAGGGCCACGTGTCACTTTTGATGAAACGGCACCGTTGAGCGAGAGGATTTTCCGGT TCAGCAGGGAAGCGGTTTTAAAGCTGAAAGCGACCGTCAATAACAACAATTCGAAATGGGCCGGGTTGGTTGACCCGGTTGAGCTGATGGGTAAGCAGAG CAACGATGCGTTTTATCACCAAAAGAAGATGGGTGGTCAAGGCCTAAACGGTGGCGTATTGGCGGTGAAGGAGAAAGAGATCTCTTCGTTTCAGTCTCTA TGCGCGCTGGTGTGGAGAGCGGTGACACGAGCTAGAAACCTGAACGCGTCCAAAACGACGACGTTTCGGATGGCGGTGAACTGCCGCCATCGTGTGGCGC CGAAGATGGACCCCTTGTACTTCGGGAACGCGATTCAGAGCATTCCGACGTACGCGTCGGCTGGGGATGTCACTTCTCGGGAGCTGAGGTGGCTGGCGGA GAGGCTGAATGAGAACGTTGGCGCGTATAACGACGCGACGGTGAGGCGCGTGGTGTCCGAATGGGAGGCGAATCCGAGGTGTTTCCCTCTGGGGAACCTG GACGGCGCGTCGATGACAATGGGGAGCTCGCCGCGGTTCCCGATGTACGACAACGATTTCGGGTGGGGCAGGCCGTTGGCTGTTAGGAGTGGGAAGGCGA ACAAGTTCGACGGTAAGATGTCGGCTTTCCCTGGGAGAGAAGGCGGCGGGACGGTCGATCTGGAGGTGGTGTTGTCGCCGGATACGATGGATGCGATTGA AGCTGACCAGGAGTTCATGCAGTTTGTGTCGAGCTGA
AA sequence Show only first row Show all	>Lus10040222 pacid=23174004 polypeptide=Lus10040222 locus=Lus10040222.g ID=Lus10040222.BGIv1.0 annot-version=v1.0 MPAAPSNSSAVTVHSKCTVVPDQKSTMADLKLSASDLPMLSCHYIQKGALFSKPQFPFSSLCLLLKSSLSHTLSFFPPLAGRLSTESTTAEVYITCNDAG ADFLHASALSISVLDIIGSVRGPEFVNGFFAMDRTVSYQGHHRPILSVQVTELADGVFVGCSVNHSVTDGTSFWNFFNTFAQVSRGVKCISRLPDFTRDG SCPLMSSAVLKLPPGGPRVTFDETAPLSERIFRFSREAVLKLKATVNNNNSKWAGLVDPVELMGKQSNDAFYHQKKMGGQGLNGGVLAVKEKEISSFQSL CALVWRAVTRARNLNASKTTTFRMAVNCRHRVAPKMDPLYFGNAIQSIPTYASAGDVTSRELRWLAERLNENVGAYNDATVRRVVSEWEANPRCFPLGNL DGASMTMGSSPRFPMYDNDFGWGRPLAVRSGKANKFDGKMSAFPGREGGGTVDLEVVLSPDTMDAIEADQEFMQFVSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39980			HXXXD-type acyl-transferase fa...		Lus10040222 [exp]	0	1
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10038283 [exp]	1.0	0.8941
AT2G25490		FBL6, EBF1	EIN3-binding F box protein 1 (...		Lus10030102 [exp]	3.2	0.8575
AT4G24570		DIC2	dicarboxylate carrier 2 (.1)		Lus10035936 [exp]	4.6	0.8508
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10038282 [exp]	7.5	0.8393
AT4G25810		XTH23, XTR6	xyloglucan endotransglucosylas...		Lus10030484 [exp]	8.8	0.8159
AT3G49210			O-acyltransferase (WSD1-like) ...		Lus10017721 [exp]	9.2	0.7502
AT2G39980			HXXXD-type acyl-transferase fa...		Lus10028267 [exp]	9.9	0.7871
AT2G40330		RCAR9, PYL6	regulatory components of ABA r...		Lus10007275 [exp]	12.6	0.8190
AT4G37650	GRAS	SGR7, SHR	SHORT ROOT, SHOOT GRAVITROPISM...		Lus10012089 [exp]	13.9	0.7861
AT2G30130	AS2	PCK1, LBD12, AS...	PEACOCK 1, Lateral organ bound...		Lus10017431 [exp]	15.7	0.8133

Compare expression of checked genes

Lus10040222 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.