Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39950 391 / 2e-127 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028266 [exp] 1091 / 0 AT2G39950 404 / 1e-132 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G192800 [exp] 649 / 0 AT2G39950 444 / 1e-147 unknown protein Potri.008G064500 [exp] 641 / 0 AT2G39950 344 / 3e-109 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040223 pacid=23173857 polypeptide=Lus10040223 locus=Lus10040223.g ID=Lus10040223.BGIv1.0 annot-version=v1.0 ATGTCTAACTCGACGAGGCGTGAATCCGATGACGACTTCTCCGGCCAGCTGAACGGAGACGAGTTTGACGACTCCTCGTCCTTTTCCAACAGAGCCGAGA CCTCTACTGCTGGATCTGTTACGGCTGGGCTGACGGAACGATTGTCGGAGATTCTGGTTGACGAAGGGGACAGCGATTTGCTGCTTCAACGGACCGATCG CGAGGATAGGGTATTGCAGTGGTTACAGGCGCTCGATGTTCACGTCATGGGTGCTTGCCGAGCCGACGAGAGGCTGAAGCCTCTATTGAAATTGAATGCT TCTGACGGTGCTGCCGAAGATCGGCTCCTGGCGTATCTGAGCCAGCACTTTGATCCATTGGAGGTAGGCATGCTTGCTCGGTGCTTCTGCATACCGCTTG TTTCCATCAGGGTTGGCAAGATCAACAAACAAGGGAATCTGTTTTGCCCCACGTCTGCAAGAGGGAATTTGAGTCTGTCAGTGTTGCCAACTTCTGATCT ACGTTTAACATTCATCGGGGATGATGGCTCAACAGAGAGATTATTTACCCTAAGTGGTAAAGCCCATGGCTTAGCTGTTGTGGTTGAAGAAATTCCAGCA GACAGTTCTGGCCGGTCTTTTCAAATAAAAATTGCCGGCGGTAGAGTTTTTAACTATTGGTGCTGCGAAAAGTTCAAGCTGTTGGGAATTGAATTAATCT CCAAGATGAAGGATATCTTGAAGAGGAAACCATCGGTAGCTAAATTAACCGGAATTAGCAAATCTCGTCTTGATTGCTTTGCGAACCACATTCGATCATA TCTCGTGGGAATTAGCAACAAAGAAACAGCAGCTACTACCTCTCCTCCTTTGTTTTGCTCCGGTGCAGATGACTTGTCTGCTTCAACAAGTTCGTTGCAG CGTTCCAGACACCTTGGGAGGCAGCCATTGAAGACCAATCCCAATTATCAAGTAAGCCTCAGTGCACGGTCAAGTTCCTTCAAGGACGGTATCACGAGAA GCTTGTCTTCTTCGAGGAATGTTCCTCGCGAGAAGCTACACGACGTAGAGGCGAACAGTTTGCCTGCACCAGACAGCCTGGTGGTTACTGTGCCATCTTC TGCTGATGACATCGGTAAATCGCACGAAGTTACAAGTTACCCGGTGGCACCGTTGAGTTTCCTTGGATCTCTTGCAAAATTAGATATTCCAGAAATTCAA AGCTCAACTTCCTCGCCATTAACACCACCAGTATTCTCTCCATATTACAGTTGGTGCCCTTTAGGTGGAACGAATTCTTCAAAGTTTCCAGAAGTCCCTA TTTCCTCAATACAGACACCTTTGCTTCCTCCATTTTCCACGTTGATGTCTCCCTCGTCCAGTGCTTTAGCACCACTGCCCCATCTCAGCTTACCAGGACT TCCTTCGCTCGATTTGCCAGCACTCTTTCCCGGGCCATTGGTTCGGCTTCCGATTCCTGGATCTCAACAGATTTCTACCTTCACCCCTTTGATGTGTGAC CCCATTGTTCACCTTCCAGTCATCGACATTTGCTCATCTGGTCCAGCCTACTTGGTGAGTGCCGGTCCAGCTATCCCAGGTACAATCCCGCCTTTTCACT CACAGCGACCAATAACTTCCGAGACCGAATCAGCTCTAGAAGCTGGTGCCAGAGAGACTCTTCGTTTACTCATCAGCAGTTCGACTAACCCAAATCAGCA GCTGATTAATGTATTCCCGGGTATCTATTCCTCTGCCTGTGATGATGATGATGATGATGATAAGAAACAAGCAGTTCTTGCTGTTGGGAGCCGCGGTCTC TATTCTGGAACTAGGGGCGTCGATTTGATTGCAAGTGACATGGCCACCTTGGGATTGATCTCGATGTCGCATAGCTCGATTGAAGGTGGTGGTAGTTATG TAAGCGAACCATTTGCGAATTGTGAAGGATTGTCTGGAGAGACCAATAGTATGGATGAAACACCGTCTGCTCTTCCTTTTCCCAACTTGGGGGATGATGC TTAG
AA sequence Show only first row Show all	>Lus10040223 pacid=23173857 polypeptide=Lus10040223 locus=Lus10040223.g ID=Lus10040223.BGIv1.0 annot-version=v1.0 MSNSTRRESDDDFSGQLNGDEFDDSSSFSNRAETSTAGSVTAGLTERLSEILVDEGDSDLLLQRTDREDRVLQWLQALDVHVMGACRADERLKPLLKLNA SDGAAEDRLLAYLSQHFDPLEVGMLARCFCIPLVSIRVGKINKQGNLFCPTSARGNLSLSVLPTSDLRLTFIGDDGSTERLFTLSGKAHGLAVVVEEIPA DSSGRSFQIKIAGGRVFNYWCCEKFKLLGIELISKMKDILKRKPSVAKLTGISKSRLDCFANHIRSYLVGISNKETAATTSPPLFCSGADDLSASTSSLQ RSRHLGRQPLKTNPNYQVSLSARSSSFKDGITRSLSSSRNVPREKLHDVEANSLPAPDSLVVTVPSSADDIGKSHEVTSYPVAPLSFLGSLAKLDIPEIQ SSTSSPLTPPVFSPYYSWCPLGGTNSSKFPEVPISSIQTPLLPPFSTLMSPSSSALAPLPHLSLPGLPSLDLPALFPGPLVRLPIPGSQQISTFTPLMCD PIVHLPVIDICSSGPAYLVSAGPAIPGTIPPFHSQRPITSETESALEAGARETLRLLISSSTNPNQQLINVFPGIYSSACDDDDDDDKKQAVLAVGSRGL YSGTRGVDLIASDMATLGLISMSHSSIEGGGSYVSEPFANCEGLSGETNSMDETPSALPFPNLGDDA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39950			unknown protein		Lus10040223 [exp]	0	1
AT4G27450			Aluminium induced protein with...		Lus10011191 [exp]	1.0	0.9678
AT3G14460			LRR and NB-ARC domains-contain...		Lus10007261 [exp]	1.4	0.9508
AT2G39950			unknown protein		Lus10028266 [exp]	2.8	0.9379
AT3G57520		RS2, ATSIP2	raffinose synthase 2, seed imb...		Lus10007537 [exp]	7.0	0.9354
AT1G58200		MSL3	MSCS-like 3 (.1.2)		Lus10009277 [exp]	7.5	0.9115
AT5G57580			Calmodulin-binding protein (.1...		Lus10001630 [exp]	8.4	0.9301
AT2G17020			F-box/RNI-like superfamily pro...		Lus10025093 [exp]	8.9	0.9341
AT5G67480		ATBT4, BT4	BTB and TAZ domain protein 4 (...		Lus10019299 [exp]	9.0	0.9450
AT3G56680			Single-stranded nucleic acid b...		Lus10027292 [exp]	9.2	0.9364
AT3G56680			Single-stranded nucleic acid b...		Lus10038997 [exp]	10.4	0.9268

Compare expression of checked genes

Lus10040223 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.