Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25770 75 / 6e-17 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2) AT4G32870 57 / 3e-10 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028262 [exp] 328 / 3e-116 AT2G25770 75 / 2e-17 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2) Lus10005477 [exp] 77 / 1e-17 AT2G25770 172 / 2e-55 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2) Lus10006042 [exp] 62 / 3e-12 AT4G32870 145 / 3e-45 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10000573 [exp] 54 / 6e-09 AT4G32870 144 / 1e-44 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10026898 [exp] 51 / 4e-08 AT2G25770 128 / 2e-38 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G063900 [exp] 236 / 7e-80 AT4G32870 80 / 2e-19 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Potri.010G193200 [exp] 152 / 5e-48 AT2G25770 59 / 4e-12 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2) Potri.018G046100 [exp] 67 / 5e-14 AT2G25770 188 / 1e-61 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2) Potri.006G237000 [exp] 62 / 7e-12 AT4G32870 180 / 9e-59 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Potri.006G236800 [exp] 57 / 8e-10 AT4G32870 179 / 1e-57 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Potri.006G237100 [exp] 54 / 3e-09 AT4G32870 178 / 8e-58 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [flax] [poplar] Bet_v_1_like PF10604 [flax] [poplar] Polyketide_cyc2 Polyketide cyclase / dehydrase and lipid transport
Representative CDS sequence Show only first row Show all	>Lus10040227 pacid=23173838 polypeptide=Lus10040227 locus=Lus10040227.g ID=Lus10040227.BGIv1.0 annot-version=v1.0 ATGTATATCTTTGTGTTTAACAATTTCCTGCCTGGTAGTTCACTTTCCATCTTCAATAAGGATTACCTTGGAGTTCAAGAAATCACAGTAAAGTTACAGA ACACAAGGGAAGAGACAAGACAACAACAAATGGAACTCGAATCAGGAGACTCGAAATGGTACGGAAGCGTGAGGGCAATCGTGGAAGCACCCATAGACCA AGTCTGGACCATGGTTTCACAGACCAAGAGACTACCAGACTGGGTCCCAATGGTTGAAAGGTGCACAGACCTGGCTGGACAAGAAGGCCAAGTAGGCTAT GTCCGGTTAGTGTCCGGGTTTATGTTCCCTCAAGAAGACGGTGAAAGGTCTTGGATCAAGGAGAAGTTGATCTCCATGGACTCATCATGCTACAGCTATG AATACAAGATGGAAGCCAGTAATGTCGGCTTGGATGGCTCCGCGAACAAGCTCAAGCTTGTCGATTATGGGAACAGATCGACTTTGGTCGTGTGGTCGTT CGAGATAGACCCTTTGCCGGGTGCCTCTCAGGATTACATTATAGACTTTTTGGGTTATGTTTACAAATCTTCCATTGGTAGGATTGGTAGTGCCATTCAA GAAGAAAAAAAGAATGGTCCTTGA
AA sequence Show only first row Show all	>Lus10040227 pacid=23173838 polypeptide=Lus10040227 locus=Lus10040227.g ID=Lus10040227.BGIv1.0 annot-version=v1.0 MYIFVFNNFLPGSSLSIFNKDYLGVQEITVKLQNTREETRQQQMELESGDSKWYGSVRAIVEAPIDQVWTMVSQTKRLPDWVPMVERCTDLAGQEGQVGY VRLVSGFMFPQEDGERSWIKEKLISMDSSCYSYEYKMEASNVGLDGSANKLKLVDYGNRSTLVVWSFEIDPLPGASQDYIIDFLGYVYKSSIGRIGSAIQ EEKKNGP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G25770			Polyketide cyclase/dehydrase a...		Lus10040227 [exp]	0	1
AT4G12110		ATSMO1-1, SMO1-...	sterol-4alpha-methyl oxidase 1...		Lus10004322 [exp]	1.4	0.8571
AT4G18210		ATPUP10	purine permease 10 (.1)		Lus10023318 [exp]	1.7	0.8805
AT4G18210		ATPUP10	purine permease 10 (.1)		Lus10023317 [exp]	5.0	0.8192
AT1G50650			Stigma-specific Stig1 family p...		Lus10000696 [exp]	9.8	0.7769
AT1G79960	OFP	ATOFP14, OFP14	ovate family protein 14 (.1)		Lus10035891 [exp]	11.0	0.7992
					Lus10001030 [exp]	11.2	0.7622
AT2G20835			unknown protein		Lus10018561 [exp]	18.5	0.8433
AT2G37540			NAD(P)-binding Rossmann-fold s...		Lus10023762 [exp]	26.1	0.8382
AT1G52240		PIRF1, ATROPGEF...	phytochrome interacting RopGEF...		Lus10022596 [exp]	26.5	0.7988
AT5G36930			Disease resistance protein (TI...		Lus10041606 [exp]	28.4	0.7875

Compare expression of checked genes

Lus10040227 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.