Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55800 593 / 0 SBPASE sedoheptulose-bisphosphatase (.1) AT3G54050 98 / 3e-22 HCEF1 high cyclic electron flow 1 (.1.2) AT1G43670 96 / 5e-22 FINS1, AtcFBP FRUCTOSE INSENSITIVE 1, Arabidopsis thaliana cytosolic fructose-1,6-bisphosphatase, Inositol monophosphatase family protein (.1) AT5G64380 74 / 2e-14 Inositol monophosphatase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028261 [exp] 733 / 0 AT3G55800 611 / 0.0 sedoheptulose-bisphosphatase (.1) Lus10018885 [exp] 99 / 4e-23 AT1G43670 620 / 0.0 FRUCTOSE INSENSITIVE 1, Arabidopsis thaliana cytosolic fructose-1,6-bisphosphatase, Inositol monophosphatase family protein (.1) Lus10028580 [exp] 99 / 5e-23 AT1G43670 618 / 0.0 FRUCTOSE INSENSITIVE 1, Arabidopsis thaliana cytosolic fructose-1,6-bisphosphatase, Inositol monophosphatase family protein (.1) Lus10035545 [exp] 92 / 4e-20 AT3G54050 655 / 0.0 high cyclic electron flow 1 (.1.2) Lus10027748 [exp] 92 / 4e-20 AT3G54050 655 / 0.0 high cyclic electron flow 1 (.1.2) Lus10021115 [exp] 88 / 6e-19 AT3G54050 647 / 0.0 high cyclic electron flow 1 (.1.2) Lus10007061 [exp] 81 / 2e-16 AT5G64380 549 / 0.0 Inositol monophosphatase family protein (.1) Lus10017195 [exp] 80 / 4e-16 AT3G54050 601 / 0.0 high cyclic electron flow 1 (.1.2) Lus10020433 [exp] 71 / 4e-13 AT5G64380 528 / 0.0 Inositol monophosphatase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G193300 [exp] 646 / 0 AT3G55800 625 / 0.0 sedoheptulose-bisphosphatase (.1) Potri.008G063800 [exp] 643 / 0 AT3G55800 629 / 0.0 sedoheptulose-bisphosphatase (.1) Potri.005G191400 [exp] 99 / 4e-23 AT1G43670 609 / 0.0 FRUCTOSE INSENSITIVE 1, Arabidopsis thaliana cytosolic fructose-1,6-bisphosphatase, Inositol monophosphatase family protein (.1) Potri.016G106900 [exp] 98 / 2e-22 AT3G54050 619 / 0.0 high cyclic electron flow 1 (.1.2) Potri.002G069000 [exp] 94 / 2e-21 AT1G43670 619 / 0.0 FRUCTOSE INSENSITIVE 1, Arabidopsis thaliana cytosolic fructose-1,6-bisphosphatase, Inositol monophosphatase family protein (.1) Potri.016G109000 [exp] 94 / 6e-21 AT3G54050 526 / 0.0 high cyclic electron flow 1 (.1.2) Potri.017G042900 [exp] 74 / 3e-14 AT5G64380 552 / 0.0 Inositol monophosphatase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0171 [flax] [poplar] Phospoesterase PF00316 [flax] [poplar] FBPase Fructose-1-6-bisphosphatase, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10040228 pacid=23174152 polypeptide=Lus10040228 locus=Lus10040228.g ID=Lus10040228.BGIv1.0 annot-version=v1.0 ATGGCGACTGGTATAGCATGTAGTATTCGTGGGGCTTTCATACCTTCTCAGCATGTAGTGTCTCCTTCATCCATCTCTCCTTCCTTCAGCTCCAGGAGTC TGAAATCAAGCTCCATCTTTGGGGAATCATTGAAGTTGGTGCCAAGATTATCATCATCATTTAAGGTGTCCAAGGCAACGAACTCTCCTCTTGTCATCAG AAGTGAGATTGGTGATAGCCTGGAAGAGTTTTTGACAAAGGCAACGCCAGACAAGGGACTTATTAGGGTGATGACTTGCATGGGAGAGGCAATAAGGACA ATTGGTTTCAAGGTTAGAACAGCTTCTTGTGGAGGAACTCAGTGTGTCAACTCCTTTGGTGATGAGCAGCTTGCTGTTGATATGCTTGCTGACAAGTTGC TCTTTGAGGCCTTGGAACATTCCCACTTCTGCAAGTATGCTTGTTCTGAGGAAGTCCCTGAGCTTCAAGACATGGGAGGACCTGTTGAAGGTGGATTCAG TGTTGCTTTTGATCCACTTGATGGATCCAGCATTGTGGACACCAATTTCTCCGTTGGAACCATCTTCGGAGTGTGGCCGGGCGACAAGCTAACCGGAGTC ACTGGCAGGGATCAAGTGGCTGCTGCCATGGGGGTTTACGGCCCCCGAACTACTTATGTTCTTGCACTTAAGGACTATCCTGGAACTTATGAGTTCCTTC TTCTTGATGAAGGGAAGTGGCAACTTGTGAAGGAGACCAATGAAATCGGTGAAGGCAAACTGTTCTCACCTGGAAACTTGAGAGCAACTTTTGATAATCC TGAATACGAGAAGCTGATTAACTACTATGTAAAAGAGAAGTACACCTTGAGATACACAGGAGGAATGGTGCCAGATGTCAATCAGATCATTGTAAAAGAG AAAGGCATCTTCACGAACGTGATATCCCCAACAACCAAAGCGAAGCTGAGGTTGTTGTTCGAGGTGGCTCCATTGGGGCTCTTAGTCGAGAATGCTGGAG GTTACAGCAGCGATGGACATCAGTCTGTTCTAGATAAGGTGATCAAGGAACTTGATGACAGAACTCAAGTTGCTTATGGCTCCAAGAACGAGATCATCCG GTTCGAAGAGACTCTTTACGGGAAATCTAGGCTTAAGGAAGCTGGAGGTGTTCCAGTTGGAGCTGCTGCTTAA
AA sequence Show only first row Show all	>Lus10040228 pacid=23174152 polypeptide=Lus10040228 locus=Lus10040228.g ID=Lus10040228.BGIv1.0 annot-version=v1.0 MATGIACSIRGAFIPSQHVVSPSSISPSFSSRSLKSSSIFGESLKLVPRLSSSFKVSKATNSPLVIRSEIGDSLEEFLTKATPDKGLIRVMTCMGEAIRT IGFKVRTASCGGTQCVNSFGDEQLAVDMLADKLLFEALEHSHFCKYACSEEVPELQDMGGPVEGGFSVAFDPLDGSSIVDTNFSVGTIFGVWPGDKLTGV TGRDQVAAAMGVYGPRTTYVLALKDYPGTYEFLLLDEGKWQLVKETNEIGEGKLFSPGNLRATFDNPEYEKLINYYVKEKYTLRYTGGMVPDVNQIIVKE KGIFTNVISPTTKAKLRLLFEVAPLGLLVENAGGYSSDGHQSVLDKVIKELDDRTQVAYGSKNEIIRFEETLYGKSRLKEAGGVPVGAAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55800		SBPASE	sedoheptulose-bisphosphatase (...		Lus10040228 [exp]	0	1
AT3G55800		SBPASE	sedoheptulose-bisphosphatase (...		Lus10028261 [exp]	1.0	0.9946
					Lus10005720 [exp]	1.4	0.9759
AT3G46780		PTAC16	plastid transcriptionally acti...		Lus10040768 [exp]	3.5	0.9571
AT1G12250			Pentapeptide repeat-containing...		Lus10032239 [exp]	4.5	0.9600
AT4G12830			alpha/beta-Hydrolases superfam...		Lus10008747 [exp]	4.9	0.9653
AT4G01150			unknown protein		Lus10003031 [exp]	5.3	0.9556
AT3G48420			Haloacid dehalogenase-like hyd...		Lus10013663 [exp]	5.7	0.9602
AT2G04700			ferredoxin thioredoxin reducta...		Lus10039449 [exp]	6.3	0.9540
AT1G64860		SIGB, SIG2, SIG...	RNApolymerase sigma subunit 2,...		Lus10009541 [exp]	6.9	0.9435
AT2G32640			Lycopene beta/epsilon cyclase ...		Lus10015142 [exp]	7.3	0.9233

Compare expression of checked genes

Lus10040228 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.