Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G36280 739 / 0 L-Aspartase-like family protein (.1.2) AT4G18440 734 / 0 L-Aspartase-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028260 [exp] 960 / 0 AT1G36280 738 / 0.0 L-Aspartase-like family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G193400 [exp] 837 / 0 AT1G36280 758 / 0.0 L-Aspartase-like family protein (.1.2) Potri.008G063800 [exp] 81 / 2e-16 AT3G55800 629 / 0.0 sedoheptulose-bisphosphatase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00206 [flax] [poplar] Lyase_1 Lyase PF08328 [flax] [poplar] ASL_C Adenylosuccinate lyase C-terminal
Representative CDS sequence Show only first row Show all	>Lus10040229 pacid=23174128 polypeptide=Lus10040229 locus=Lus10040229.g ID=Lus10040229.BGIv1.0 annot-version=v1.0 ATGGTGGTCGGGGCTTCTTCTAGGCTTTTAAGCGGCAGCAGCCTTTTCTCATCCTTAGCTCCAAGAACAACGCCTGGACTTGGAAACACAGGTTCAATTC TCCCTTCGAATGCTTCATTCCCCTTCTCTTCGCCGTCTTCCCGACGATCTTGCTTTTGCAGTGTCTCTGCTCCCAAGATGAGGAAAGCTGACGTTCGGGC GTTCGAGCTCTCGAATTTGACGGCGTTATCGCCTTTGGACGGGAGGTATTGGAGTAAAGTGAAGGACTTGTCTCCTTACATGAGTGAATATGGTCTTATA TTCTACCGGGTTCTTGTTGAGATTAAATGGCTGCTGAAGCTTTCACAGATTCCTGAAATCAATGAGGTCCCTGAGTTTAGTCAGAATGCTGAATTGTTTT TGGAAGAAGTAATTGGTGATTTTAGCCTGGATGATGCTTTAGAGGTTAAGAACATAGAGAGGGTGACTAACCATGATGTGAAAGCTGTGGAGTACTTTCT GAAGAAGAAATGTCAATCACATCCTGAGATTGTTAAGGTGCTCGAGTTTTTCCATTTTGCTTGCACATCCGAGGATATAAACAATCTTGCCCATGGACTG ATGCTGAAAGAGTCGCTGAATGGCGTCATTTTCCCTGTTATGGATGAATTGATCAAAGATATTTCCAGGATGGCTGAACGATATGCTTCTATTCCTTTGC TTTCTCGCACTCATGGACAGCCAGCTTCGCCAACAACTCTAGGAAAGGAAATGGCCGTTTTTGCTGCGAGGTTAAGTGAACAAAAGCAAGAAATTTCGCA AGTGAAGATCAAAGGGAAGTTTGCTGGTGCAGTTGGGAACTACAATGCTCATATCAGTGCATATCCTAGCATTTACTGGCCTCAGATTGCTAAAGAGTTT GTCGAATCTCTTGGATTGGTATTCAATCCCTATGTCACTCAGATCGAGCCACATGATTATATGGCAAGGCTTTTCTACGGAATCAGCTTGTTCAACACAA TATTAATTGATTTTGATAGGGATATTTGGGGGTATGTATCCTATGGATACTTCAAGCAGATAACAAAAGCTGGTGAGATTGGTTCCTCAACTATGCCTCA CAAAGTAAACCCTATTGACTTTGAAAACAGCGAGGGTAATCTCGGGAAAGCTAACGGAAATTTCTCTCATCTGAGTGAGAAGTTACCCATTTCTCGTTTT CAGCGGGACCTGACCGATTCGACTGTTCTGAGGAATATGGGTGAAGGCTTGGGACATTCTCTTTTGGCCTACAAGAGTACATTGCAGGGAATTGGAAAGC TTACGGTAAACGAAGCTCGTTTGGCTGAAGACTTGGACCAGTGGTGGGAGGTGCTTGCGGAACCAATCCAAACAGTGATGCGACGATATGGTGTTCCGGA GCCTTACGAGAAGCTGAAAGAGCTAACAAGGGGAAGAGATGTTACGAAGGAGAGGATTCGAGAATTCATCGAAGGCCTGGAGTTGCCTCAAGATGCTAAA TCCTACCTGTTGGAGCTGACACCCCACAACTACTTTGGAGCAGCTGTTGAACTGGCCAACTCTGTTGGTCACATTACTAATGTTGTGAACGGTGTCAGAG CTCTATAG
AA sequence Show only first row Show all	>Lus10040229 pacid=23174128 polypeptide=Lus10040229 locus=Lus10040229.g ID=Lus10040229.BGIv1.0 annot-version=v1.0 MVVGASSRLLSGSSLFSSLAPRTTPGLGNTGSILPSNASFPFSSPSSRRSCFCSVSAPKMRKADVRAFELSNLTALSPLDGRYWSKVKDLSPYMSEYGLI FYRVLVEIKWLLKLSQIPEINEVPEFSQNAELFLEEVIGDFSLDDALEVKNIERVTNHDVKAVEYFLKKKCQSHPEIVKVLEFFHFACTSEDINNLAHGL MLKESLNGVIFPVMDELIKDISRMAERYASIPLLSRTHGQPASPTTLGKEMAVFAARLSEQKQEISQVKIKGKFAGAVGNYNAHISAYPSIYWPQIAKEF VESLGLVFNPYVTQIEPHDYMARLFYGISLFNTILIDFDRDIWGYVSYGYFKQITKAGEIGSSTMPHKVNPIDFENSEGNLGKANGNFSHLSEKLPISRF QRDLTDSTVLRNMGEGLGHSLLAYKSTLQGIGKLTVNEARLAEDLDQWWEVLAEPIQTVMRRYGVPEPYEKLKELTRGRDVTKERIREFIEGLELPQDAK SYLLELTPHNYFGAAVELANSVGHITNVVNGVRAL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G36280			L-Aspartase-like family protei...		Lus10040229 [exp]	0	1
AT2G19490			recA DNA recombination family ...		Lus10017151 [exp]	1.0	0.8804
AT4G19650			Mitochondrial transcription te...		Lus10038336 [exp]	3.2	0.8463
AT4G21705			Tetratricopeptide repeat (TPR)...		Lus10003590 [exp]	8.0	0.8583
AT3G57430		OTP84	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10015414 [exp]	15.9	0.7991
AT3G49990			unknown protein		Lus10010625 [exp]	19.4	0.8379
AT3G56070		ROC2	rotamase cyclophilin 2 (.1.2)		Lus10042553 [exp]	21.0	0.8185
AT4G21130		EMB2271	EMBRYO DEFECTIVE 2271, Transdu...		Lus10023255 [exp]	27.8	0.8550
AT2G18220			Noc2p family (.1)		Lus10027010 [exp]	31.2	0.8439
AT2G25870			haloacid dehalogenase-like hyd...		Lus10006031 [exp]	33.0	0.8141
AT1G15870			Mitochondrial glycoprotein fam...		Lus10026060 [exp]	44.5	0.7746

Compare expression of checked genes

Lus10040229 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.