Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39920 200 / 1e-62 HAD superfamily, subfamily IIIB acid phosphatase (.1.2.3) AT4G29260 89 / 1e-20 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT5G44020 82 / 4e-18 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT4G25150 82 / 6e-18 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT4G29270 81 / 1e-17 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT2G38600 77 / 3e-16 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT1G04040 77 / 4e-16 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT5G51260 75 / 1e-15 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT5G24770 71 / 4e-14 ATVSP2, VSP2 vegetative storage protein 2 (.1.2) AT5G24780 67 / 9e-13 ATVSP1, ATVSP, VSP1 vegetative storage protein 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028259 [exp] 527 / 0 AT2G39920 194 / 2e-60 HAD superfamily, subfamily IIIB acid phosphatase (.1.2.3) Lus10002714 [exp] 518 / 0 AT2G39920 180 / 7e-56 HAD superfamily, subfamily IIIB acid phosphatase (.1.2.3) Lus10023731 [exp] 89 / 3e-20 AT1G04040 273 / 3e-92 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10011774 [exp] 84 / 1e-18 AT1G04040 272 / 8e-92 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10043042 [exp] 83 / 2e-18 AT4G29270 251 / 7e-84 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10011140 [exp] 81 / 1e-17 AT4G29270 251 / 8e-84 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10014968 [exp] 69 / 3e-13 AT4G29260 231 / 1e-75 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10007939 [exp] 63 / 2e-11 AT4G25150 300 / 5e-103 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10013478 [exp] 63 / 3e-11 AT4G25150 301 / 1e-103 HAD superfamily, subfamily IIIB acid phosphatase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G193500 [exp] 284 / 3e-95 AT2G39920 195 / 1e-60 HAD superfamily, subfamily IIIB acid phosphatase (.1.2.3) Potri.006G152900 [exp] 91 / 3e-21 AT4G29260 292 / 3e-100 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.002G257700 [exp] 89 / 2e-20 AT1G04040 317 / 1e-109 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.016G139700 [exp] 84 / 1e-18 AT2G38600 347 / 1e-121 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.010G066500 [exp] 82 / 7e-18 AT1G04040 285 / 5e-97 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.001G191000 [exp] 72 / 3e-14 AT4G25150 259 / 8e-87 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.006G110900 [exp] 68 / 3e-13 AT2G38600 322 / 2e-112 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.004G232900 [exp] 68 / 4e-13 AT5G51260 346 / 3e-121 HAD superfamily, subfamily IIIB acid phosphatase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF03767 [flax] [poplar] Acid_phosphat_B HAD superfamily, subfamily IIIB (Acid phosphatase)
Representative CDS sequence Show only first row Show all	>Lus10040231 pacid=23174016 polypeptide=Lus10040231 locus=Lus10040231.g ID=Lus10040231.BGIv1.0 annot-version=v1.0 ATGAATAAATCATCATCTGCGGAAGAAGTAGAGAGATGCGTTGAATCATCTGCTGCTGCTGCTTCCTACGCACACCAGATGGAGAGGGAGTACTCTGCTG GAAGCCTCTCCACCGCTGAAGATTCCGAGAGGGGAAGCGGATACACGATGGAGTCAGGATTCTACATGACATCATTCGCAGCAACCATATTCATTGCTCT CCTCATAACAGTCGGAGTCTTGATGGTCAGCTTGCTCATTTTATTAACAGTCATGCTGCAAGCCTGTGAGAACAGAAACAACGGTGTCGTCGAGATGCAA ACAAAGCATAATGCTAATTACCACTACTGCAAGAGCTTTGCTATGCATGCGGAGCTCAACAACCTGCCTTCACTGGACTTCCCTCCAGCGTGCTGGGACG ATCTCGCTACTCGCCCCAACAAAGTCGTCGAGTATCAAACTGACCTGACGACCAATCTGAGGGTTGTTGAAGGATACTTCGATAAGGTCGCGCCTTCAGA AGATGAAAGAGATGTAGTGTTGATCGACGCAGACAGTGTTTTGATTTCTAGTCCTCATTTCAGCCATTCCTTGAGGTACAGACAAAACCATTCCCGACAA GCGTGTCTCGTTAGACTGTACAAGAAGCTTCAAAGTAGTGGATGGTTGTTGATTTTGGCATCCAGGAATCCAGAAATACAAAGAAATGCGACTGTGGAGC AACTCAATTCTGCAGGATACAGTGCCTGGTCATTTTTGGTTCTGAGATCAGACGAGGAAACGAAGCTTCCTACGAGTGAATACTTTTCGAGACGAAGACT TGCATTAGAGAACGAAGGATTCCGGATATCAGCAATGATTAGCAGCCAGATGGATGTACTGACAGGTCCATGTCCAGGAACTCGTATGTTCAAGCTTCCG AATCCACAATACTATTACGTCCAAGATTCTAGAAGCTAA
AA sequence Show only first row Show all	>Lus10040231 pacid=23174016 polypeptide=Lus10040231 locus=Lus10040231.g ID=Lus10040231.BGIv1.0 annot-version=v1.0 MNKSSSAEEVERCVESSAAAASYAHQMEREYSAGSLSTAEDSERGSGYTMESGFYMTSFAATIFIALLITVGVLMVSLLILLTVMLQACENRNNGVVEMQ TKHNANYHYCKSFAMHAELNNLPSLDFPPACWDDLATRPNKVVEYQTDLTTNLRVVEGYFDKVAPSEDERDVVLIDADSVLISSPHFSHSLRYRQNHSRQ ACLVRLYKKLQSSGWLLILASRNPEIQRNATVEQLNSAGYSAWSFLVLRSDEETKLPTSEYFSRRRLALENEGFRISAMISSQMDVLTGPCPGTRMFKLP NPQYYYVQDSRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39920			HAD superfamily, subfamily III...		Lus10040231 [exp]	0	1
AT2G39920			HAD superfamily, subfamily III...		Lus10002714 [exp]	1.0	0.9469
AT1G19110			inter-alpha-trypsin inhibitor ...		Lus10027666 [exp]	4.9	0.7806
AT2G28250		NCRK	Protein kinase superfamily pro...		Lus10021460 [exp]	8.7	0.7809
AT1G61065			Protein of unknown function (D...		Lus10011208 [exp]	9.5	0.7695
AT3G10360		APUM4	pumilio 4 (.1)		Lus10038706 [exp]	9.5	0.7507
AT3G20410		CPK9	calmodulin-domain protein kina...		Lus10040071 [exp]	11.2	0.8004
AT2G19710			Regulator of Vps4 activity in ...		Lus10040542 [exp]	14.5	0.7163
AT2G22260			oxidoreductase, 2OG-Fe(II) oxy...		Lus10038746 [exp]	15.2	0.7069
AT1G03080			kinase interacting (KIP1-like)...		Lus10006896 [exp]	16.2	0.7636
AT1G07420		SMO2-1, ATSMO1,...	Arabidopsis thaliana sterol 4-...		Lus10001556 [exp]	19.8	0.7391

Compare expression of checked genes

Lus10040231 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.