Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55780 392 / 2e-134 Glycosyl hydrolase superfamily protein (.1) AT3G61810 196 / 5e-59 Glycosyl hydrolase family 17 protein (.1) AT4G26830 182 / 5e-53 O-Glycosyl hydrolases family 17 protein (.1) AT3G07320 177 / 6e-51 O-Glycosyl hydrolases family 17 protein (.1) AT5G56590 174 / 3e-49 O-Glycosyl hydrolases family 17 protein (.1) AT1G66250 172 / 9e-49 O-Glycosyl hydrolases family 17 protein (.1) AT2G01630 165 / 6e-47 O-Glycosyl hydrolases family 17 protein (.1.2) AT4G14080 160 / 1e-44 MEE48 maternal effect embryo arrest 48, O-Glycosyl hydrolases family 17 protein (.1) AT5G42720 159 / 2e-44 Glycosyl hydrolase family 17 protein (.1) AT4G18340 156 / 1e-43 Glycosyl hydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028258 [exp] 692 / 0 AT3G55780 402 / 9e-139 Glycosyl hydrolase superfamily protein (.1) Lus10038211 [exp] 166 / 1e-46 AT3G07320 614 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10023245 [exp] 163 / 1e-45 AT5G24318 561 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10020618 [exp] 162 / 3e-45 AT2G27500 494 / 5e-175 Glycosyl hydrolase superfamily protein (.1.2.3) Lus10004869 [exp] 160 / 3e-45 AT2G27500 491 / 5e-174 Glycosyl hydrolase superfamily protein (.1.2.3) Lus10031037 [exp] 156 / 7e-44 AT3G57240 312 / 3e-105 "beta-1,3-glucanase 3", beta-1,3-glucanase 3 (.1) Lus10015151 [exp] 156 / 7e-43 AT2G05790 731 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10018306 [exp] 154 / 3e-42 AT5G55180 632 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10032562 [exp] 153 / 7e-42 AT5G55180 642 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G193700 [exp] 436 / 2e-152 AT3G55780 425 / 2e-147 Glycosyl hydrolase superfamily protein (.1) Potri.002G261800 [exp] 164 / 6e-46 AT2G16230 635 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.014G183800 [exp] 160 / 6e-45 AT2G16230 515 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.014G182000 [exp] 158 / 6e-44 AT2G16230 506 / 2e-177 O-Glycosyl hydrolases family 17 protein (.1) Potri.014G184900 [exp] 158 / 6e-44 AT2G16230 498 / 2e-174 O-Glycosyl hydrolases family 17 protein (.1) Potri.014G182321 [exp] 158 / 8e-44 AT2G16230 506 / 4e-177 O-Glycosyl hydrolases family 17 protein (.1) Potri.001G321900 [exp] 158 / 9e-44 AT3G23770 620 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.014G184300 [exp] 157 / 1e-43 AT2G16230 511 / 1e-179 O-Glycosyl hydrolases family 17 protein (.1) Potri.014G182500 [exp] 157 / 1e-43 AT2G16230 504 / 4e-177 O-Glycosyl hydrolases family 17 protein (.1) Potri.014G185100 [exp] 157 / 1e-43 AT2G16230 514 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00332 [flax] [poplar] Glyco_hydro_17 Glycosyl hydrolases family 17
Representative CDS sequence Show only first row Show all	>Lus10040232 pacid=23174077 polypeptide=Lus10040232 locus=Lus10040232.g ID=Lus10040232.BGIv1.0 annot-version=v1.0 ATGGATGCTCTGCGTCTCTCCTTCTACACTGTTCCGCTTCTCCTCCTCTGCCTTTCCTTCATCCATCCACTCTCCCTTACTGCTCCGCCGTCCGCCTCCG TAATCGGCGTCACCTACACACCCCCGATCACTTCCTCCTCATCAACCGGCGCCGGAAATGCTTCCCAGCCGCCTCCGCCTCAGAATCAAGAGCATCCGGA GGCGATTGCTTCTACAGTCACCGATCTCAACTTCGGCGCCGTCCGATTGCCCCATCCTGACCCCAACCTCATCAGAGCTTTCGGATTCACCGACATCACC GTGCTCTTATCCATCCCCAACGTCCTCATACCGTCTCTGGCATCCAATCGGACTCTGGCTCAGCGCTGGATTTACGTCCATGTGCTCCCGTTCTTCCCCC GCACTAAGATCGCAATCATCTCCGTCGGAGTCGACGCCTTACCTGAGCTGAACTTACTCCTCTCCGCGATACAGAACGTTCATCTTGCCCTGCGTGATCT AGGAATCAACAAGATCTCCGTCTCCACGACTTTCTCGTTCGTCAATCTCGTCACCACGGCGTTCCCGCCTTCGAGCGCGACTTTCAAGGAGACGATCGGC GGAATCTTGATGCGGCCGCTGCTCCAGTTCTTGGAGGACACGAATTCCTCGCTATTGGTGAATTTGTATCCGTACAACGTCTACAGGATGCACTCTCAGA TCCCTCTCGGATTCGCGTTGTTCCAGGAGCACAATTTCAACTTCCGCGACGACGTGGTGACGGGAGTTCGGTACCGCAACTTGTTCGATATGATGGTGGA CGCCGTGGTCACTTCGATGGCCGTTGCCGGTCATGAGAATGTTCCGGTGATCATTGCTGAGACGGGCTGGCCGAGCTCCGGCGGGGAAGGCCCCTTCGAG GCCGACGCCAATCCGGCGTACGCGGAGCTGTACTTGAGGTCGCTGGTTGCTCATCTGGTCTCCGGCAGAGGTACGCCGCTGAGGAAAGAAGGCGTATCGC AGGTTTACATCTACGAGTTGGTAGATCGAGAGGTGCACGAGCAAGGAACGCGCAATTGGGGAGTTCTGTACCCTAATACGAGCAAGAAGTACCACTTCGA CTTCTCTTCCGGTACTACCAGCATCACAATCAGTAAGGGGAAACTGTTTCTTCTGGTCATTGCTTCATTCTTTCTGCTCTGTTCTTTGTAG
AA sequence Show only first row Show all	>Lus10040232 pacid=23174077 polypeptide=Lus10040232 locus=Lus10040232.g ID=Lus10040232.BGIv1.0 annot-version=v1.0 MDALRLSFYTVPLLLLCLSFIHPLSLTAPPSASVIGVTYTPPITSSSSTGAGNASQPPPPQNQEHPEAIASTVTDLNFGAVRLPHPDPNLIRAFGFTDIT VLLSIPNVLIPSLASNRTLAQRWIYVHVLPFFPRTKIAIISVGVDALPELNLLLSAIQNVHLALRDLGINKISVSTTFSFVNLVTTAFPPSSATFKETIG GILMRPLLQFLEDTNSSLLVNLYPYNVYRMHSQIPLGFALFQEHNFNFRDDVVTGVRYRNLFDMMVDAVVTSMAVAGHENVPVIIAETGWPSSGGEGPFE ADANPAYAELYLRSLVAHLVSGRGTPLRKEGVSQVYIYELVDREVHEQGTRNWGVLYPNTSKKYHFDFSSGTTSITISKGKLFLLVIASFFLLCSL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55780			Glycosyl hydrolase superfamily...		Lus10040232 [exp]	0	1
					Lus10010847 [exp]	11.7	0.6288
AT5G55980			serine-rich protein-related (....		Lus10008880 [exp]	13.3	0.6206
AT3G15130			Tetratricopeptide repeat (TPR)...		Lus10007682 [exp]	17.7	0.5972
AT3G47570			Leucine-rich repeat protein ki...		Lus10030851 [exp]	22.6	0.5992
AT3G22680		RDM1	RNA-DIRECTED DNA METHYLATION 1...		Lus10003012 [exp]	34.6	0.5856
					Lus10021782 [exp]	40.2	0.5791
					Lus10023587 [exp]	43.4	0.5791
AT1G74670		GASA6	GA-stimulated Arabidopsis 6, G...		Lus10024216 [exp]	46.4	0.5791
AT2G25470		AtRLP21	receptor like protein 21 (.1)		Lus10027855 [exp]	49.2	0.5791
AT3G19540			Protein of unknown function (D...		Lus10028040 [exp]	51.9	0.5791

Compare expression of checked genes

Lus10040232 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.