Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39910 368 / 7e-122 ARM repeat superfamily protein (.1) AT3G55770 306 / 2e-101 LIM WLIM2b WLIM2b, GATA type zinc finger transcription factor family protein (.1.2.3.4.5.6.7) AT2G39900 297 / 9e-98 LIM WLIM2a WLIM2a, GATA type zinc finger transcription factor family protein (.1) AT2G45800 261 / 1e-83 LIM PLIM2a PLIM2a, GATA type zinc finger transcription factor family protein (.1.2) AT3G61230 254 / 7e-81 LIM PLIM2c PLIM2c, GATA type zinc finger transcription factor family protein (.1) AT1G01780 253 / 2e-80 LIM PLIM2b PLIM2b, GATA type zinc finger transcription factor family protein (.1) AT1G10200 216 / 2e-66 LIM WLIM1, SF3 WLIM1, GATA type zinc finger transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028256 [exp] 548 / 0 AT2G39910 276 / 1e-89 ARM repeat superfamily protein (.1) Lus10028257 [exp] 378 / 5e-129 AT3G55770 296 / 2e-103 WLIM2b, GATA type zinc finger transcription factor family protein (.1.2.3.4.5.6.7) Lus10014781 [exp] 267 / 4e-86 AT1G01780 313 / 5e-110 PLIM2b, GATA type zinc finger transcription factor family protein (.1) Lus10008476 [exp] 251 / 8e-80 AT3G61230 279 / 3e-96 PLIM2c, GATA type zinc finger transcription factor family protein (.1) Lus10000287 [exp] 248 / 1e-78 AT3G61230 271 / 5e-93 PLIM2c, GATA type zinc finger transcription factor family protein (.1) Lus10020687 [exp] 247 / 5e-78 AT3G61230 259 / 2e-88 PLIM2c, GATA type zinc finger transcription factor family protein (.1) Lus10029859 [exp] 246 / 9e-78 AT3G61230 268 / 9e-92 PLIM2c, GATA type zinc finger transcription factor family protein (.1) Lus10018674 [exp] 223 / 4e-69 AT1G10200 323 / 4e-114 WLIM1, GATA type zinc finger transcription factor family protein (.1) Lus10042140 [exp] 218 / 4e-67 AT1G10200 280 / 2e-97 WLIM1, GATA type zinc finger transcription factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G063500 [exp] 464 / 2e-158 AT2G39910 423 / 2e-145 ARM repeat superfamily protein (.1) Potri.010G193800 [exp] 343 / 9e-116 AT3G55770 323 / 2e-114 WLIM2b, GATA type zinc finger transcription factor family protein (.1.2.3.4.5.6.7) Potri.008G063600 [exp] 337 / 2e-113 AT3G55770 324 / 1e-114 WLIM2b, GATA type zinc finger transcription factor family protein (.1.2.3.4.5.6.7) Potri.002G157300 [exp] 252 / 3e-80 AT1G01780 308 / 8e-108 PLIM2b, GATA type zinc finger transcription factor family protein (.1) Potri.001G107100 [exp] 250 / 2e-79 AT3G61230 256 / 6e-87 PLIM2c, GATA type zinc finger transcription factor family protein (.1) Potri.014G080900 [exp] 249 / 3e-79 AT1G01780 307 / 2e-107 PLIM2b, GATA type zinc finger transcription factor family protein (.1) Potri.003G124300 [exp] 249 / 7e-79 AT3G61230 264 / 2e-90 PLIM2c, GATA type zinc finger transcription factor family protein (.1) Potri.002G118000 [exp] 223 / 5e-69 AT1G10200 325 / 7e-115 WLIM1, GATA type zinc finger transcription factor family protein (.1) Potri.001G292900 [exp] 219 / 1e-67 AT1G10200 317 / 9e-112 WLIM1, GATA type zinc finger transcription factor family protein (.1) Potri.015G072400 [exp] 216 / 1e-66 AT1G10200 277 / 5e-96 WLIM1, GATA type zinc finger transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [flax] [poplar] Zn_Beta_Ribbon PF00412 [flax] [poplar] LIM LIM domain
Representative CDS sequence Show only first row Show all	>Lus10040233 pacid=23174141 polypeptide=Lus10040233 locus=Lus10040233.g ID=Lus10040233.BGIv1.0 annot-version=v1.0 ATGTCTTTTCTTGGTACCCAGGATAAATGCAAGGCCTGCGAGAAGACCGTGTATCCCATGGAACTTGTCTCTGCTGATGGCGTTCCGTATCACAAATCTT GCTTCAAGTGCTTCCACTGCAAAGGCACATTAAAGCTGGGAAATTACTCTTCTATGGAAGGAGTGCTGTATTGTAAACCTCATTTTGAGCAGTTGTTCAA GGAGAGTGGTAATTACAACAAGAACTTCCAATCACCTGCAAAGTCAGCTGAGAAGTTAGGCCCTCAACTGACCAAGTCACCTAGCAAAGCTGCCAGCATG TTCTCGGGGACACAAGATAAGTGTGCTACGTGTGGCAAAACTGCATATCCTCTTGAGAAGGTAACGGTGGAGAGCCTGGCATATCACAAGACATGCTTCA AGTGCGTTCATGGAGGCTGCTCCCTCTCCCCTTCAAACTACGCAGCACTTGAGGGAGTGCTCTACTGCAAACATCATTTCTCCCAATTGTTCAAGGAGAA GGGTAGCTACAACCATGTTCTCGTCAAATCGGGGTCAGTAAGGCGACCAGCAAGTGCAGCGGCAGCTGCAGCTACTGCTGCTGAGGTACCAGTGCCAATG CCAGCGCCGGAGTTATCGGGGTCGTTACTCAACCATCTATCCAGTACACCGTACTCGCAACCTGAAGGCACACCCGTGTCAGCCAAATCAATCCTCGAGT CTCTCCTCCGTAAACCTGCCGCAGTTACCACCGCTGTTGGGGAACCACAGCTCCACGAATCGATCAGAGACTTGGCTCTAGCATCCGCCTTGCTAGCCGC GTCCCAATCCTCCGTTCACGAGTTGCTCTCATGGATTCACGGAGAGCTCGCCGATGCTGCTGCCGCCGCTTTCCAGACTCTCACCGTTATTTATAGCGAG AGATACGATAAAAGTTTGGTCGTGGAATTGGCGCCGGAGGTGTTGCTTCTGTTGAAGGACAAGATTAAGGAGAGCTCCATCGATAAAGGTACTGATGGAG ATGAAATCTCCGCCGCTTCCGCTAGGGTTCCGGTTGGCTTCTCGATTCTGGCTGCTTATCAGCTGAGGTGGTTCATTACGCAGATTGATCGTCCACATTT GGGGAAGCTGTGCAATTTGGTGATTCCTTGTGGATTGACTGCTCTTGATCATTGGTCAGCGGAGGGGCAAGGGATGATTTGTTTAATTCATCTAGCGAAA AATGTTGATGCTACTGAGTTTAGTGTTTTTGAGGATGTTATCCTTGATGCTTGCTGCCAGAACATTGCATCTGCTGACGAGATATGGCATCTTGCAGTAG AAATGTCAGTGCTTCTTGTGACCAGCATTCACCCAAGAAATCCTAGAAGCCATTGGTATGAGAGGATGCTAGGTGAGATGCTAAGTCACCTGGAGCGTCA GCCAGGCAATAAGGATCGACGAGTTGCATGGCTAACATCTATCGACCGACTCTTTGAGAGCATTGGTCTTGTATTATTAGCTCATTTCAGGAGACTTTTC CCACTTTTCTTTAAGTGGATCCACGCTGACGATGATGAAACTGTTCTTCTAGTTCTAAAACGGGTGCATACAGTCCTGAGAGTAACATGGATAAGGAACT CACCATACATTGCACGATTGGTGGATGAGCTTGTTTCCTTGTACAAGGAAGCAGCATTGAAAGTGGCTCGTGAAGAGATTAGGACAAATATACTCAACGT ACTGTTCTTGCTGAAGCGATGCAAGGGGCAGCTGTTCGAAACAGCCTGGGAAAAGTACACAGATGATTCGAATCTCACAGCTCTGCAAATCTCTTTGACT GAGCTCACCATCAATGATGCAAGTTCAGCCTTGAAGCGAGAGGACAGCCCACAACTCTCCCCTTGA
AA sequence Show only first row Show all	>Lus10040233 pacid=23174141 polypeptide=Lus10040233 locus=Lus10040233.g ID=Lus10040233.BGIv1.0 annot-version=v1.0 MSFLGTQDKCKACEKTVYPMELVSADGVPYHKSCFKCFHCKGTLKLGNYSSMEGVLYCKPHFEQLFKESGNYNKNFQSPAKSAEKLGPQLTKSPSKAASM FSGTQDKCATCGKTAYPLEKVTVESLAYHKTCFKCVHGGCSLSPSNYAALEGVLYCKHHFSQLFKEKGSYNHVLVKSGSVRRPASAAAAAATAAEVPVPM PAPELSGSLLNHLSSTPYSQPEGTPVSAKSILESLLRKPAAVTTAVGEPQLHESIRDLALASALLAASQSSVHELLSWIHGELADAAAAAFQTLTVIYSE RYDKSLVVELAPEVLLLLKDKIKESSIDKGTDGDEISAASARVPVGFSILAAYQLRWFITQIDRPHLGKLCNLVIPCGLTALDHWSAEGQGMICLIHLAK NVDATEFSVFEDVILDACCQNIASADEIWHLAVEMSVLLVTSIHPRNPRSHWYERMLGEMLSHLERQPGNKDRRVAWLTSIDRLFESIGLVLLAHFRRLF PLFFKWIHADDDETVLLVLKRVHTVLRVTWIRNSPYIARLVDELVSLYKEAALKVAREEIRTNILNVLFLLKRCKGQLFETAWEKYTDDSNLTALQISLT ELTINDASSALKREDSPQLSP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39910			ARM repeat superfamily protein...		Lus10040233 [exp]	0	1
AT2G18770			P-loop containing nucleoside t...		Lus10013024 [exp]	1.4	0.7986
AT4G28190	ULT	ULT1	ULTRAPETALA1, Developmental re...		Lus10039791 [exp]	14.8	0.8005
AT3G53220			Thioredoxin superfamily protei...		Lus10013827 [exp]	16.2	0.7648
AT1G26380			FAD-binding Berberine family p...		Lus10038437 [exp]	28.5	0.7488
AT3G01435			Expressed protein (.1)		Lus10003331 [exp]	40.5	0.7446
AT3G25430			Polynucleotidyl transferase, r...		Lus10002539 [exp]	47.1	0.7304
AT1G16570			UDP-Glycosyltransferase superf...		Lus10031569 [exp]	48.9	0.7206
AT4G16510			YbaK/aminoacyl-tRNA synthetase...		Lus10008505 [exp]	53.7	0.7610
AT1G18720			Protein of unknown function (D...		Lus10001646 [exp]	55.2	0.6713
AT1G09250	bHLH	bHLH149, AIF4	basic helix-loop-helix (bHLH) ...		Lus10031425 [exp]	59.2	0.6932

Compare expression of checked genes

Lus10040233 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.