Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37980 572 / 0 O-fucosyltransferase family protein (.1) AT3G54100 553 / 0 O-fucosyltransferase family protein (.1) AT5G01100 549 / 0 O-fucosyltransferase family protein (.1) AT5G35570 532 / 0 O-fucosyltransferase family protein (.1) AT1G22460 410 / 1e-137 O-fucosyltransferase family protein (.1) AT5G64600 399 / 1e-133 O-fucosyltransferase family protein (.1) AT1G14020 391 / 6e-131 O-fucosyltransferase family protein (.1) AT5G15740 389 / 6e-130 RRT1 O-fucosyltransferase family protein (.1) AT3G02250 374 / 5e-124 O-fucosyltransferase family protein (.1) AT2G03280 361 / 3e-119 O-fucosyltransferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028253 [exp] 1044 / 0 AT2G37980 577 / 0.0 O-fucosyltransferase family protein (.1) Lus10021119 [exp] 560 / 0 AT3G54100 783 / 0.0 O-fucosyltransferase family protein (.1) Lus10035540 [exp] 560 / 0 AT3G54100 760 / 0.0 O-fucosyltransferase family protein (.1) Lus10027753 [exp] 558 / 0 AT3G54100 744 / 0.0 O-fucosyltransferase family protein (.1) Lus10017190 [exp] 556 / 0 AT2G37980 781 / 0.0 O-fucosyltransferase family protein (.1) Lus10017171 [exp] 522 / 1e-179 AT5G35570 828 / 0.0 O-fucosyltransferase family protein (.1) Lus10021557 [exp] 517 / 3e-178 AT5G35570 807 / 0.0 O-fucosyltransferase family protein (.1) Lus10020882 [exp] 392 / 6e-131 AT5G64600 613 / 0.0 O-fucosyltransferase family protein (.1) Lus10008719 [exp] 389 / 9e-130 AT1G22460 662 / 0.0 O-fucosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G109700 [exp] 570 / 0 AT2G37980 741 / 0.0 O-fucosyltransferase family protein (.1) Potri.006G095300 [exp] 560 / 0 AT2G37980 722 / 0.0 O-fucosyltransferase family protein (.1) Potri.006G142400 [exp] 533 / 0 AT5G35570 843 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G059600 [exp] 421 / 3e-142 AT5G64600 673 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G161800 [exp] 393 / 4e-131 AT1G22460 678 / 0.0 O-fucosyltransferase family protein (.1) Potri.002G100400 [exp] 391 / 2e-130 AT1G22460 663 / 0.0 O-fucosyltransferase family protein (.1) Potri.017G101300 [exp] 384 / 7e-128 AT5G15740 837 / 0.0 O-fucosyltransferase family protein (.1) Potri.008G090600 [exp] 377 / 1e-125 AT1G14020 776 / 0.0 O-fucosyltransferase family protein (.1) Potri.004G113500 [exp] 375 / 1e-124 AT5G15740 801 / 0.0 O-fucosyltransferase family protein (.1) Potri.010G164700 [exp] 372 / 2e-123 AT1G14020 781 / 0.0 O-fucosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF10250 [flax] [poplar] O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10040236 pacid=23174090 polypeptide=Lus10040236 locus=Lus10040236.g ID=Lus10040236.BGIv1.0 annot-version=v1.0 ATGACGGGAGCAGGAGAAACCTCATCATCCAACACACCACACTTGATGACCCGGCGGCGAGTTGGGGACTGCTTAGAATCTCAAGAACATGTCGTCAACG AATGGTCAACGTCCGGCGGCGGCGGAGGAGAGAAGAGGTTGCTGCTCCGGCGGCCGGGAAGGAGGGGGATGTTCGGGGTTTTGTCGCTGATGGTATTCCT CACGATGCTAGCCAAATTCCCACTTCTGCACACGTTGCAGAGCTTGGATTCGGATCCGGTCATGACCGGCATTGTCGTCTCGGGTGCCGGTAATAATCTC GTGAACGAGACTTCTTCCTCTTCCGACGGCAGGGGTGGTGGGAAGTTACTCAATGCGCCGGAGAAGTTTTTGGTTCCGGACATTTGGGAGAAGCCCAATA GCAACGGCTTTTACAGTTGCATTGACGAATCGAAAAGCGACGAAATGAGAACAGTGACCACAAATGGATATATAGAAGTTCATGCCAATGGCGGATTGAA TCAAATGAAAGCTGGGATAAGTGATATGGTGGCCATAGCCAAGCTCATGAACGCCACATTGGTTCTTCCTTCCCTCGACCACTCTTCTTACTGGACGGAC CCAAGTGGGTTCAAGGATATCTTCGACGTCGAGCACTTCATTCGAGTCCTGAAAGACGACATTGACATCGTGGAATCGGTTCCCAAAGAGCTTGACGGGG TAATGCCGTTGGAGAAGCCGCCGGTTTCTTGGTCCAAGGCTGCCTATTACAGAAACCAGATGGCTACTCTTCTGAGAAAGCACAAGATCATCAGATTCAC TCACTCGGATTCTCGCCTCACCAACAATGGCCTCCCGTCTTCGATTCAAAGACTCCGCTGCCGATCAATGTACGATGCGCTTAAGTTCCGGGATGAAATT GCAGAGGTCGGCAGGAAGCTGGTCGAGAGGCTCAGGGGGGGAGCTAGACAGCGTTTCATAGCTCTTCATTTGAGATACGAGAAGGACATGCTTGCTTTCA CGGGTTGCAGTCACAACCTTACGAAAATCGAGGGCGACGAGCTATTAGCCATGAGGATGAACACGAGGCACTGGAAGCACAAACATATCAACAGCACGGC GAGACGACTGCAGGGGAACTGCCCGATGACCCCACGAGAAGTCGCTGTGTTCCTTCAAGCAATGGAGTATCCTTACGATACACAGATTTACATAGTTGCA GGGGAAATCTACGGCGAGAATGGACTTAATGCACTCAAGGAGAAGTTCCCAAACGTACATACCCATTTCAGTCTGGCAACTGAGGAGGAGATGGTAAATC TCAGGAGTCGACAGAATCAGCTTGCGGCTATAGACTACATTGTGGCAATTGAGAGTGATGTTTTCGTCTACAGTTACGACGGTAATATGGCTAAAGTAGC CACGGGTCACCGCAGATTCAAAGGGTTCCGGAAGACCATAAGCCCTGATAAATACCATTTCGTAAGATTGATCGACAAGCTGGACGAGGGAATGATTCCT TGGGATAAATTTTCGTCGAAAGTGAAAGAAATGCATAAAAATAAGACTGGGGCTCCATCACATAGAAAGCCAGGGCGTTCGTCAAAGCACGAGGAGAGCT TTTACGCAAACCCTTTTCCGGGTTGTATCTGTGAAAGAACACCAGAAAACAAAAGATCTAGTGACCTGAGATAG
AA sequence Show only first row Show all	>Lus10040236 pacid=23174090 polypeptide=Lus10040236 locus=Lus10040236.g ID=Lus10040236.BGIv1.0 annot-version=v1.0 MTGAGETSSSNTPHLMTRRRVGDCLESQEHVVNEWSTSGGGGGEKRLLLRRPGRRGMFGVLSLMVFLTMLAKFPLLHTLQSLDSDPVMTGIVVSGAGNNL VNETSSSSDGRGGGKLLNAPEKFLVPDIWEKPNSNGFYSCIDESKSDEMRTVTTNGYIEVHANGGLNQMKAGISDMVAIAKLMNATLVLPSLDHSSYWTD PSGFKDIFDVEHFIRVLKDDIDIVESVPKELDGVMPLEKPPVSWSKAAYYRNQMATLLRKHKIIRFTHSDSRLTNNGLPSSIQRLRCRSMYDALKFRDEI AEVGRKLVERLRGGARQRFIALHLRYEKDMLAFTGCSHNLTKIEGDELLAMRMNTRHWKHKHINSTARRLQGNCPMTPREVAVFLQAMEYPYDTQIYIVA GEIYGENGLNALKEKFPNVHTHFSLATEEEMVNLRSRQNQLAAIDYIVAIESDVFVYSYDGNMAKVATGHRRFKGFRKTISPDKYHFVRLIDKLDEGMIP WDKFSSKVKEMHKNKTGAPSHRKPGRSSKHEESFYANPFPGCICERTPENKRSSDLR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37980			O-fucosyltransferase family pr...		Lus10040236 [exp]	0	1
					Lus10008536 [exp]	33.5	0.6672
AT1G47670			Transmembrane amino acid trans...		Lus10012281 [exp]	39.1	0.6612
					Lus10029069 [exp]	42.9	0.6350
AT1G14040			EXS (ERD1/XPR1/SYG1) family pr...		Lus10000203 [exp]	66.3	0.6600
AT1G20640		NLP4	Plant regulator RWP-RK family ...		Lus10030744 [exp]	76.7	0.6520
AT1G61110	NAC	ANAC025	NAC domain containing protein ...		Lus10015076 [exp]	85.9	0.6556
					Lus10015577 [exp]	97.0	0.6177
AT1G25520			Uncharacterized protein family...		Lus10041478 [exp]	101.8	0.6223
AT5G01740			Nuclear transport factor 2 (NT...		Lus10001261 [exp]	113.0	0.6075
AT1G14040			EXS (ERD1/XPR1/SYG1) family pr...		Lus10030440 [exp]	182.6	0.6095

Compare expression of checked genes

Lus10040236 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.