Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51740 423 / 2e-148 ATSYP81, SYP81, ATUFE1 ORTHOLOG OF YEAST UFE1 \(UNKNOWN FUNCTION-ESSENTIAL 1\), ARABIDOPSIS THALIANA ORTHOLOG OF YEAST UFE1 \(UNKNOWN FUNCTION-ESSENTIAL 1\), syntaxin of plants 81 (.1) AT2G37975 52 / 8e-09 Yos1-like protein (.1) AT3G54085 46 / 1e-06 Yos1-like protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028252 [exp] 489 / 2e-174 AT1G51740 382 / 3e-134 ORTHOLOG OF YEAST UFE1 \(UNKNOWN FUNCTION-ESSENTIAL 1\), ARABIDOPSIS THALIANA ORTHOLOG OF YEAST UFE1 \(UNKNOWN FUNCTION-ESSENTIAL 1\), syntaxin of plants 81 (.1) Lus10017192 [exp] 55 / 1e-09 AT2G37975 129 / 6e-41 Yos1-like protein (.1) Lus10000226 [exp] 53 / 7e-09 AT2G37975 129 / 6e-41 Yos1-like protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G194300 [exp] 484 / 2e-172 AT1G51740 424 / 1e-150 ORTHOLOG OF YEAST UFE1 \(UNKNOWN FUNCTION-ESSENTIAL 1\), ARABIDOPSIS THALIANA ORTHOLOG OF YEAST UFE1 \(UNKNOWN FUNCTION-ESSENTIAL 1\), syntaxin of plants 81 (.1) Potri.008G063100 [exp] 473 / 1e-167 AT1G51740 409 / 2e-144 ORTHOLOG OF YEAST UFE1 \(UNKNOWN FUNCTION-ESSENTIAL 1\), ARABIDOPSIS THALIANA ORTHOLOG OF YEAST UFE1 \(UNKNOWN FUNCTION-ESSENTIAL 1\), syntaxin of plants 81 (.1) Potri.008G063000 [exp] 79 / 2e-18 AT2G37975 72 / 2e-18 Yos1-like protein (.1) Potri.010G194400 [exp] 71 / 3e-15 AT2G37975 72 / 2e-18 Yos1-like protein (.1) Potri.016G109500 [exp] 57 / 2e-10 AT2G37975 78 / 1e-20 Yos1-like protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10496 [flax] [poplar] Syntaxin-18_N SNARE-complex protein Syntaxin-18 N-terminus
Representative CDS sequence Show only first row Show all	>Lus10040237 pacid=23173829 polypeptide=Lus10040237 locus=Lus10040237.g ID=Lus10040237.BGIv1.0 annot-version=v1.0 ATGATCTGCGCCTTGAAAGATTTTGTTCGTTCTCCAGAGAATTCGGAGAAGCTCCACCCTCTAGGTGCAAGGAAACGGTCTTCGTTTAATATGGCTAGTG CATTAGCAAGAAGCAGAAATCCCTCTAGCAACGTCCACAACCCCATTTCCTGCACCGTGTACATTACATTATATTCTAGCTCAATTGACAATCTCCAGTT TACAGATAACACCATAGAAGCACATGGAAGTAAGAGTTGCTACTATCTTCATACTCAAGGCAGTAAGGGAAATGACAAAATTTCCATTACAGGTCGCGTC TCTGCTGCTCGAATCGTGAATTTTCCGGTGGAAATCTGTGAAGCGATGGCGAGAGTTAGGGATAGGACGGAGGATTTCAAAGATGCGGTGAGGCATTTGG CTGTCTCTGCAGGATATGACGAGTCGAAATTGGCGGCAATCATGGCGTCGTTCATCATTCACAAGCCCAAGCAACTGTCACCTTTCACTAAAGCTGCATT GAAAACGTTGGAAAGCATAGGAGCTTTAGAACAGTTCATGTTGAAGCATCGAAAGGATTATGTGGATATGCACCGTACCACTGAGCAGGAAAGAGATAGC ATTGAACAAGAGGTTGCCGAGTTCATCAAAGCATGCAAAGAACAAATCGACATTCTTAAAAATAGCATAAACAATGAAGAAACAAATGCAAAAGGATGGC TTGGTGTCAGGGCTGATAACTCCAATGTTGATACTATAGCACACAAACATGGTGTGGTATTGATTCTGAGTGAGAAACTTCATGCTGTTACATCACAATT TGATAAATTAAGGGCCATAAGGTTCCAAGATGCTATAAATAAAAGGATGCCAAGAAGAAAACAAAAGAGAGTAGCAACTTCAAGCTCAGCATCTAAAATA GATGATCCAGAAATGAAAGATCCTAATGTAACTCAGTTGGAGCCTCTTCGAGTTCAGCAACAATTATTGGATGATGAAACTCGTGCACTTCAGGTGGAGT TAACCAATCTCTTAGATGCAGCTCAACAAACTGAAACCAAGATGGTGGAAATGTCTGCCTTAAATCATCTCATGTCAACCCATGTTTTGCAGCAAGCACA ACAAATAGAACATCTGTATGATCAGGCAGTCGAAGCAACGAAGAACGTTGAACTCGGTAACAAGGAACTGTCTCAAGCCATACAGAGGAATAGCAGTAGC AGGACATTTCTTGTGCTTTTTCTATTTGTACTTACATTTTCAATCATTTTTCTTGATTGGTACAGCTGA
AA sequence Show only first row Show all	>Lus10040237 pacid=23173829 polypeptide=Lus10040237 locus=Lus10040237.g ID=Lus10040237.BGIv1.0 annot-version=v1.0 MICALKDFVRSPENSEKLHPLGARKRSSFNMASALARSRNPSSNVHNPISCTVYITLYSSSIDNLQFTDNTIEAHGSKSCYYLHTQGSKGNDKISITGRV SAARIVNFPVEICEAMARVRDRTEDFKDAVRHLAVSAGYDESKLAAIMASFIIHKPKQLSPFTKAALKTLESIGALEQFMLKHRKDYVDMHRTTEQERDS IEQEVAEFIKACKEQIDILKNSINNEETNAKGWLGVRADNSNVDTIAHKHGVVLILSEKLHAVTSQFDKLRAIRFQDAINKRMPRRKQKRVATSSSASKI DDPEMKDPNVTQLEPLRVQQQLLDDETRALQVELTNLLDAAQQTETKMVEMSALNHLMSTHVLQQAQQIEHLYDQAVEATKNVELGNKELSQAIQRNSSS RTFLVLFLFVLTFSIIFLDWYS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G51740		ATSYP81, SYP81,...	ORTHOLOG OF YEAST UFE1 \(UNKNO...		Lus10040237 [exp]	0	1
AT1G09920			TRAF-type zinc finger-related ...		Lus10028213 [exp]	4.5	0.8608
AT1G12390			Cornichon family protein (.1)		Lus10004320 [exp]	4.9	0.8550
AT2G17787			unknown protein		Lus10017274 [exp]	7.4	0.8645
AT2G23940			Protein of unknown function (D...		Lus10041903 [exp]	11.2	0.8452
AT3G61415		ASK21	SKP1-like 21 (.1.2)		Lus10036365 [exp]	11.6	0.8215
AT2G44770			ELMO/CED-12 family protein (.1...		Lus10003841 [exp]	13.4	0.8256
AT4G36720		HVA22K	HVA22-like protein K (.1)		Lus10007215 [exp]	13.4	0.8187
AT5G11600			unknown protein		Lus10001603 [exp]	13.5	0.8085
AT2G23940			Protein of unknown function (D...		Lus10028450 [exp]	14.8	0.8480
AT4G31580		SRZ22, RSZP22, ...	RS-containing zinc finger prot...		Lus10020123 [exp]	15.4	0.8020

Compare expression of checked genes

Lus10040237 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.