Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05830 170 / 2e-53 RING/FYVE/PHD zinc finger superfamily protein (.1) AT2G37950 130 / 6e-38 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G01070 127 / 1e-36 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT5G59000 112 / 2e-30 RING/FYVE/PHD zinc finger superfamily protein (.1) AT2G34200 72 / 3e-15 RING/FYVE/PHD zinc finger superfamily protein (.1) AT2G45530 64 / 2e-12 RING/U-box superfamily protein (.1) AT5G60580 64 / 1e-11 RING/U-box superfamily protein (.1.2.3.4) AT3G06330 55 / 5e-09 RING/U-box superfamily protein (.1.2.3) AT3G09760 56 / 6e-09 RING/U-box superfamily protein (.1) AT5G03180 55 / 7e-09 RING/U-box superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028249 [exp] 305 / 4e-106 AT5G05830 184 / 8e-59 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10017197 [exp] 173 / 4e-54 AT5G05830 182 / 1e-57 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10021113 [exp] 169 / 2e-53 AT5G05830 167 / 7e-53 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10035549 [exp] 151 / 1e-45 AT5G05830 157 / 4e-48 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10027744 [exp] 151 / 2e-45 AT5G05830 162 / 8e-50 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10040716 [exp] 124 / 1e-35 AT5G05830 159 / 1e-49 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10016451 [exp] 124 / 2e-35 AT5G05830 164 / 1e-51 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10015273 [exp] 103 / 2e-26 AT2G34200 106 / 3e-27 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10007293 [exp] 100 / 8e-26 AT2G34200 103 / 6e-27 RING/FYVE/PHD zinc finger superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G195100 [exp] 185 / 3e-59 AT5G05830 206 / 9e-68 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.008G062600 [exp] 177 / 4e-56 AT5G05830 211 / 7e-70 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.016G105900 [exp] 168 / 2e-52 AT5G05830 191 / 2e-61 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.006G094000 [exp] 166 / 1e-51 AT5G05830 192 / 8e-62 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.009G039700 [exp] 132 / 4e-39 AT5G05830 159 / 2e-49 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.001G246700 [exp] 127 / 9e-37 AT5G59000 159 / 2e-49 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.004G059200 [exp] 93 / 4e-22 AT5G05830 107 / 3e-27 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.011G068800 [exp] 87 / 8e-20 AT5G05830 91 / 4e-21 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.011G149200 [exp] 64 / 3e-12 AT2G45530 236 / 3e-78 RING/U-box superfamily protein (.1) Potri.006G024000 [exp] 64 / 5e-12 AT5G60580 361 / 4e-120 RING/U-box superfamily protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10040240 pacid=23174044 polypeptide=Lus10040240 locus=Lus10040240.g ID=Lus10040240.BGIv1.0 annot-version=v1.0 ATGGAGTCTGCCACTTCCCAAAAACCCCACTTGGACGTGAGTGCATCTGCTGGCGACAAGGAAGCAACCAACGTCGGCCACCGTGTAGAGGAAGAGAGGG AAGAGAAAGATGGGAGCTTTTCCAGTGATGAGTCAGAGTTGGATCTGGAGCTTGGACTTGTAGTTGATAATAATAATGAGATTAGCGATGATGAAGATAA GGAGGAGGTGCATTTGAGTAATGTTGAGATTATTAGGGATTGTAGGATTTGTCACATGAGCTTGGATGAAGAGTCTGGTGGTGGGCTCCCTATTGACTTG GGTTGTTCTTGTAAAGATGATTTGGCTGCTTCCCACAGACATTGTGCTGAAGCTTGGTTCAAGATCAAAGGTAACAAAACCTGCGAGATATGTGGATCGG TCGCACGAAACGTGGCCGGTCCAACCGAAGCAGAGACGAATGTGGAGCAATGGAGTGATCAGGGCAATGAGCAGGCGGCTGTGGCATCATCATCAGGAGC AACAGCAGGAAATTCACAAGCTGATCAGTCGAACACAACCAGATACTTTTGGCAGGGACATCGCTTCCTCAACTTCCTACTGGCATGTATGGTATTTGCT TTTGTGATCTCTTGGCTCTTCCACTTCAATGTCCCTTCGTAG
AA sequence Show only first row Show all	>Lus10040240 pacid=23174044 polypeptide=Lus10040240 locus=Lus10040240.g ID=Lus10040240.BGIv1.0 annot-version=v1.0 MESATSQKPHLDVSASAGDKEATNVGHRVEEEREEKDGSFSSDESELDLELGLVVDNNNEISDDEDKEEVHLSNVEIIRDCRICHMSLDEESGGGLPIDL GCSCKDDLAASHRHCAEAWFKIKGNKTCEICGSVARNVAGPTEAETNVEQWSDQGNEQAAVASSSGATAGNSQADQSNTTRYFWQGHRFLNFLLACMVFA FVISWLFHFNVPS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05830			RING/FYVE/PHD zinc finger supe...		Lus10040240 [exp]	0	1
					Lus10016381 [exp]	2.4	0.7237
AT5G11590	AP2_ERF	DREB3, TINY2	TINY2, Integrase-type DNA-bind...		Lus10001601 [exp]	5.7	0.7633
AT1G14590			Nucleotide-diphospho-sugar tra...		Lus10034422 [exp]	7.1	0.7120
					Lus10025147 [exp]	23.5	0.6395
AT4G14750		IQD19	IQ-domain 19 (.1)		Lus10039366 [exp]	24.4	0.7044
AT1G31710			Copper amine oxidase family pr...		Lus10004912 [exp]	31.0	0.6890
AT3G52750		FTSZ2-2	Tubulin/FtsZ family protein (....		Lus10014196 [exp]	32.8	0.7180
AT5G05830			RING/FYVE/PHD zinc finger supe...		Lus10028249 [exp]	45.3	0.7030
AT5G08510			Pentatricopeptide repeat (PPR)...		Lus10030225 [exp]	49.2	0.6486
AT2G29260			NAD(P)-binding Rossmann-fold s...		Lus10040730 [exp]	53.9	0.6888

Compare expression of checked genes

Lus10040240 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.