Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05840 548 / 0 Protein of unknown function (DUF620) (.1) AT3G55720 433 / 7e-150 Protein of unknown function (DUF620) (.1) AT5G66740 411 / 3e-142 Protein of unknown function (DUF620) (.1) AT1G75160 400 / 1e-137 Protein of unknown function (DUF620) (.1) AT3G19540 353 / 8e-118 Protein of unknown function (DUF620) (.1) AT1G49840 350 / 1e-116 Protein of unknown function (DUF620) (.1) AT1G27690 348 / 1e-116 Protein of unknown function (DUF620) (.1) AT1G79420 295 / 4e-96 Protein of unknown function (DUF620) (.1) AT5G06610 265 / 3e-85 Protein of unknown function (DUF620) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004669 [exp] 869 / 0 AT5G05840 558 / 0.0 Protein of unknown function (DUF620) (.1) Lus10026031 [exp] 402 / 2e-138 AT5G66740 643 / 0.0 Protein of unknown function (DUF620) (.1) Lus10014323 [exp] 408 / 2e-134 AT5G66740 650 / 0.0 Protein of unknown function (DUF620) (.1) Lus10010811 [exp] 384 / 3e-131 AT1G75160 484 / 9e-172 Protein of unknown function (DUF620) (.1) Lus10007157 [exp] 380 / 1e-129 AT1G75160 477 / 6e-169 Protein of unknown function (DUF620) (.1) Lus10024790 [exp] 362 / 2e-121 AT3G19540 630 / 0.0 Protein of unknown function (DUF620) (.1) Lus10013891 [exp] 353 / 3e-118 AT3G19540 674 / 0.0 Protein of unknown function (DUF620) (.1) Lus10018707 [exp] 315 / 4e-103 AT3G19540 566 / 0.0 Protein of unknown function (DUF620) (.1) Lus10026605 [exp] 262 / 1e-85 AT3G19540 405 / 2e-141 Protein of unknown function (DUF620) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G195200 [exp] 635 / 0 AT5G05840 600 / 0.0 Protein of unknown function (DUF620) (.1) Potri.008G062500 [exp] 627 / 0 AT5G05840 614 / 0.0 Protein of unknown function (DUF620) (.1) Potri.002G262400 [exp] 449 / 2e-157 AT1G75160 541 / 0.0 Protein of unknown function (DUF620) (.1) Potri.014G181500 [exp] 438 / 6e-153 AT1G75160 533 / 0.0 Protein of unknown function (DUF620) (.1) Potri.007G027800 [exp] 407 / 1e-140 AT5G66740 645 / 0.0 Protein of unknown function (DUF620) (.1) Potri.014G019900 [exp] 363 / 3e-122 AT3G19540 583 / 0.0 Protein of unknown function (DUF620) (.1) Potri.001G297500 [exp] 357 / 1e-119 AT3G19540 665 / 0.0 Protein of unknown function (DUF620) (.1) Potri.009G092400 [exp] 345 / 9e-115 AT3G19540 644 / 0.0 Protein of unknown function (DUF620) (.1) Potri.010G174200 [exp] 320 / 2e-106 AT1G79420 524 / 0.0 Protein of unknown function (DUF620) (.1) Potri.008G081700 [exp] 320 / 3e-106 AT1G79420 522 / 0.0 Protein of unknown function (DUF620) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04788 [flax] [poplar] DUF620 Protein of unknown function (DUF620)
Representative CDS sequence Show only first row Show all	>Lus10040241 pacid=23173933 polypeptide=Lus10040241 locus=Lus10040241.g ID=Lus10040241.BGIv1.0 annot-version=v1.0 ATGAGGAAACTCTGTCCAAACTACGATCGGGAAGACGGGTTGGAGACGGTTTTGGAGGTTCCGATCCCGGAAGAAGTCTTCACCTCTTCGGCCAGTAGTC GGAGCGGCGGCGCCGGGAACCTTTCTTGGCAGAGTATGAAGGCTTGGATGACTAGGACGAATGGTTATCATGAGCAGAAGGCGGCTCACTCGACGGCGGA GAAGAGCATGGAGATTCAGATCTTGTTGGGTGTTGCAGGCGCACCTTTGATTCCTTTCCCTGTCAATGGCAACAGTCAGCTCATTACCCGGAATTTCAAG GACCAGTCGATCGAGGCGTCAATGGCAAAATACATAGTGCAGCAATACGTGGCGGCGGTGGGAGGAGAAACGGCTCTGAATTCTGTAGAGAGCATGTACG CGATGGGGAAGGTGAAAATGGCTGCTTCTGAATTTTCTACCGGGGAAGCGAACAACAAACCGGTTAAGGTGAAGAACATGAAGAGCGGGAGTGGAGAGAT GGGCGGGTTTGTTCTGTGGCAGAAAAGGCCTGAGCTTTGGTGCTTGGAGCTTGTGGTTTCTGGCTGCAAGATCAGTGCAGGTAGTGATGGTAAAGTTGCT TGGAGGCAAACTCCTTGGCACCATTCTCATGCTTCCAGAGGTCCCCCCAGACCCCTTCGGCGTTTCCTTCAGGGTCTTGATCCGAAGTCAACAGCCAACC TATTCTCCAACTCAACTTGCACGGGCGAAAAGACGATTAACGACGAGGACTGCTTCGTACTAAAGCTCGAAGCGGACCCTGCATCGCTACGAGCAAGAAG CACAAGCAACGTAGAGATCATCAGGCATACAGTATGGGGATATTTCAGCCAAAGAACAGGATTATTAGTCCAGTTAGAAGACTCCCACCTGCTCAGAATC AAAGCTCCCGGAAGCAACGAGAGCGTGTTCTGGGAGACGACGATGGAATCGACAATTCATGACTACAGAACCATAGACGGGATGATCAACATTGCTCATG CGGGAAGGACGAAGGTTTCGTTAATCAGGTTTGGTGATAGCCGCGAGAGCCATTCGTCCCGGACGCATATGGAGGAAGTGTGGGAGATCGAGGAGGTCGA TTTCAACATCAAAGGGCTGTCAATGGACTGTTTCCTTCCGCCGAGTGATCTGACGAAGGAAGAAGATGCTTATGATGGAGGAGTGATGGATGCTAACGAT AGTAATGTGAAGCTTCCGTCGAAGATCCTTCGATCCGGTTCTAACAAGGTTATTAGTGCTTCTAAGGTAGTTGCTATTGATGTTGAGGATCCGGATCATC TTGAAGAGAATAAGAAACGTGAAAATTTGTAA
AA sequence Show only first row Show all	>Lus10040241 pacid=23173933 polypeptide=Lus10040241 locus=Lus10040241.g ID=Lus10040241.BGIv1.0 annot-version=v1.0 MRKLCPNYDREDGLETVLEVPIPEEVFTSSASSRSGGAGNLSWQSMKAWMTRTNGYHEQKAAHSTAEKSMEIQILLGVAGAPLIPFPVNGNSQLITRNFK DQSIEASMAKYIVQQYVAAVGGETALNSVESMYAMGKVKMAASEFSTGEANNKPVKVKNMKSGSGEMGGFVLWQKRPELWCLELVVSGCKISAGSDGKVA WRQTPWHHSHASRGPPRPLRRFLQGLDPKSTANLFSNSTCTGEKTINDEDCFVLKLEADPASLRARSTSNVEIIRHTVWGYFSQRTGLLVQLEDSHLLRI KAPGSNESVFWETTMESTIHDYRTIDGMINIAHAGRTKVSLIRFGDSRESHSSRTHMEEVWEIEEVDFNIKGLSMDCFLPPSDLTKEEDAYDGGVMDAND SNVKLPSKILRSGSNKVISASKVVAIDVEDPDHLEENKKRENL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05840			Protein of unknown function (D...		Lus10040241 [exp]	0	1
AT4G32060			calcium-binding EF hand family...		Lus10005346 [exp]	10.1	0.8607
AT4G10265			Wound-responsive family protei...		Lus10033731 [exp]	11.0	0.8344
AT4G17260			Lactate/malate dehydrogenase f...		Lus10004350 [exp]	11.1	0.8626
AT1G77120		ADH1, ATADH, AT...	ARABIDOPSIS THALIANA ALCOHOL D...		Lus10042787 [exp]	13.7	0.8147
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10020773 [exp]	14.2	0.8223
AT1G20270			2-oxoglutarate (2OG) and Fe(II...		Lus10017249 [exp]	17.5	0.8280
AT4G10265			Wound-responsive family protei...		Lus10018532 [exp]	24.4	0.8352
AT5G47910		ATRBOHD, RBOHD	respiratory burst oxidase homo...		Lus10032517 [exp]	25.3	0.7609
AT3G10040	Trihelix		sequence-specific DNA binding ...		Lus10035582 [exp]	26.2	0.8022
AT5G56350			Pyruvate kinase family protein...		Lus10013396 [exp]	29.1	0.8160

Compare expression of checked genes

Lus10040241 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.