Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22400 104 / 2e-24 ATUGT85A1, UGT85A1 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) AT1G22370 103 / 4e-24 ATUGT85A5 UDP-glucosyl transferase 85A5 (.1.2) AT1G22360 101 / 2e-23 ATUGT85A2, AT2 UDP-glucosyl transferase 85A2 (.1.2) AT1G22340 99 / 1e-22 ATUGT85A7 UDP-glucosyl transferase 85A7 (.1) AT1G22380 99 / 2e-22 ATUGT85A3 UDP-glucosyl transferase 85A3 (.1) AT1G78270 98 / 3e-22 ATUGT85A4 UDP-glucosyl transferase 85A4 (.1) AT2G36790 55 / 5e-08 UGT73C6 UDP-glucosyl transferase 73C6 (.1) AT2G36800 53 / 1e-07 UGT73C5, DOGT1 UDP-GLUCOSYL TRANSFERASE 73C5, don-glucosyltransferase 1 (.1) AT3G11340 53 / 2e-07 UGT76B1 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) AT3G53160 51 / 9e-07 UGT73C7 UDP-glucosyl transferase 73C7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004670 [exp] 424 / 7e-147 AT1G22340 313 / 1e-101 UDP-glucosyl transferase 85A7 (.1) Lus10014831 [exp] 215 / 3e-65 AT1G22380 296 / 5e-95 UDP-glucosyl transferase 85A3 (.1) Lus10009876 [exp] 209 / 7e-63 AT1G22380 295 / 2e-94 UDP-glucosyl transferase 85A3 (.1) Lus10017201 [exp] 120 / 5e-30 AT1G22380 337 / 4e-111 UDP-glucosyl transferase 85A3 (.1) Lus10013922 [exp] 111 / 9e-27 AT1G22400 533 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10024584 [exp] 107 / 1e-25 AT1G22400 570 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10013924 [exp] 105 / 8e-25 AT1G22400 551 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10032220 [exp] 105 / 9e-25 AT1G22380 601 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10032218 [exp] 101 / 3e-23 AT1G22380 564 / 0.0 UDP-glucosyl transferase 85A3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G062400 [exp] 226 / 1e-69 AT1G22380 344 / 8e-114 UDP-glucosyl transferase 85A3 (.1) Potri.016G105300 [exp] 157 / 1e-43 AT1G22380 327 / 8e-107 UDP-glucosyl transferase 85A3 (.1) Potri.016G105400 [exp] 157 / 2e-43 AT1G22380 324 / 6e-106 UDP-glucosyl transferase 85A3 (.1) Potri.002G098400 [exp] 109 / 3e-26 AT1G22360 640 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052166 [exp] 108 / 4e-26 AT1G22360 607 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052300 [exp] 107 / 1e-25 AT1G22360 603 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052400 [exp] 107 / 2e-25 AT1G22360 620 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052000 [exp] 107 / 2e-25 AT1G22360 617 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052232 [exp] 106 / 4e-25 AT1G22360 622 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052100 [exp] 105 / 5e-25 AT1G22360 612 / 0.0 UDP-glucosyl transferase 85A2 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040242 pacid=23173998 polypeptide=Lus10040242 locus=Lus10040242.g ID=Lus10040242.BGIv1.0 annot-version=v1.0 ATGGGCCTTGACAAAGCACCAATTTTTCCTCACGCTCTGATCTTCCCATTTCCAGTTCAGGGCCACGTCAACTCCATGCTCAAACTAGCCGAGCTCTTAT CCCTCGCCGGCGGCGGCGGCATCCGAATCACCTTCCTCAACTCCGACTACACCCACAAGCGCCTGATCCAGTTCTCCGACGCCGAATCCCGATTCTCGGT GTACCCTGGATTCCAATTGAAGACCATCGACGACCACCACATCCCGATGGAAAAGCTCACCAAAGGCGACAAGGTCTTGGATTTGGTGGGAGCAATGGAA TCTGAAATGAAGCCGGATTTTCGCGATATGCTGTCTCGGATGGATCCGCCGGTGACCTGTGTGATCGGAGATGGACTTTTGGGGTTCATCCGTGAGGTTT TGCTGGAATTGGGGATTCCTGTCATCCGATTTCGCACAGTTTCACCTTGCTGCTTCTGGGTCAACTTCTGCCTCCCGGATTTAATCGAAGCCGGCGAACT CCCCCATCTATTATTATTTCCGAAGATCAGCAAGGTGCCCGGGATGGAATCCTTTCTCAGGAGTCGAGATCTACCCGGAATGTGTCGGGTGTCGGGTTTG GACGACCCGACATTTGTCATGCTCATCAATGCAACGAGAGAATCTCCTCCTCTGTCTCCGCTAATTCTCAACACATTCGAAGATTTGGACTGTTCAATTC TGTCTCAAATCCGCCGCCATTTCCCCCCAAACATACGCAATTGGGCCACTCCACCAGCATCTGGAATCAAGGCTACAAACGACCGGATGGAACTAGACTT TGGAGAGCGTTTCGGCTGGTGTCCCGATGATCTGCTGGCGTTTTTCGCGGACCAGCTGGTGAACAGCAGGGTCGTGAGCGAGGTTTATAATCTGGGGTTG GATATGAAGGATGTTTGTGACCGAAAAGTTGTCAAAAGGACGGTGAATGAGCTGATGGGTGAGAGGAAGGACGAGTTTCGAAGTGTAGCGGCTGAAATGG CTGCATTGGCGAAGGAGAGCGTGGCGGAAGGTGGATCGTCTTGCCGGAATCTGGAGCTCTTGATTCAGGATATCAAGCTGATGAGTGTTAAAGGCAGCAG ATGA
AA sequence Show only first row Show all	>Lus10040242 pacid=23173998 polypeptide=Lus10040242 locus=Lus10040242.g ID=Lus10040242.BGIv1.0 annot-version=v1.0 MGLDKAPIFPHALIFPFPVQGHVNSMLKLAELLSLAGGGGIRITFLNSDYTHKRLIQFSDAESRFSVYPGFQLKTIDDHHIPMEKLTKGDKVLDLVGAME SEMKPDFRDMLSRMDPPVTCVIGDGLLGFIREVLLELGIPVIRFRTVSPCCFWVNFCLPDLIEAGELPHLLLFPKISKVPGMESFLRSRDLPGMCRVSGL DDPTFVMLINATRESPPLSPLILNTFEDLDCSILSQIRRHFPPNIRNWATPPASGIKATNDRMELDFGERFGWCPDDLLAFFADQLVNSRVVSEVYNLGL DMKDVCDRKVVKRTVNELMGERKDEFRSVAAEMAALAKESVAEGGSSCRNLELLIQDIKLMSVKGSR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78270		ATUGT85A4	UDP-glucosyl transferase 85A4 ...		Lus10040242 [exp]	0	1
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Lus10037150 [exp]	25.3	0.6328
AT5G45800		MEE62	maternal effect embryo arrest ...		Lus10007287 [exp]	27.0	0.6426
AT1G56230			Protein of unknown function (D...		Lus10020675 [exp]	70.8	0.5849
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10026328 [exp]	126.4	0.6068
AT1G75900		EXL3	GDSL-like Lipase/Acylhydrolase...		Lus10017278 [exp]	135.9	0.5660
AT1G02400		ATGA2OX4, ATGA2...	DOWNSTREAM TARGET OF AGL15 1, ...		Lus10004511 [exp]	179.4	0.5866
AT3G53810			Concanavalin A-like lectin pro...		Lus10001562 [exp]	191.3	0.5641

Compare expression of checked genes

Lus10040242 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.