Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55700 169 / 3e-50 UDP-Glycosyltransferase superfamily protein (.1) AT3G55710 161 / 5e-47 UDP-Glycosyltransferase superfamily protein (.1) AT5G05870 142 / 7e-40 UGT76C1 UDP-glucosyl transferase 76C1 (.1) AT5G05860 142 / 9e-40 UGT76C2 UDP-glucosyl transferase 76C2 (.1) AT3G11340 142 / 9e-40 UGT76B1 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) AT5G05900 137 / 5e-38 UDP-Glycosyltransferase superfamily protein (.1) AT5G05880 135 / 3e-37 UDP-Glycosyltransferase superfamily protein (.1) AT5G05890 133 / 1e-36 UDP-Glycosyltransferase superfamily protein (.1) AT5G38010 97 / 4e-23 UDP-Glycosyltransferase superfamily protein (.1) AT3G46670 92 / 1e-21 UGT76E11 UDP-glucosyl transferase 76E11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004671 [exp] 366 / 9e-127 AT3G55700 450 / 4e-156 UDP-Glycosyltransferase superfamily protein (.1) Lus10037268 [exp] 214 / 7e-67 AT3G11340 447 / 1e-154 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Lus10040246 [exp] 183 / 3e-55 AT3G11340 488 / 3e-171 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Lus10004672 [exp] 175 / 5e-52 AT3G11340 417 / 1e-142 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Lus10016460 [exp] 117 / 2e-30 AT5G59590 400 / 2e-136 UDP-glucosyl transferase 76E2 (.1) Lus10040725 [exp] 116 / 3e-30 AT5G59590 408 / 9e-140 UDP-glucosyl transferase 76E2 (.1) Lus10016461 [exp] 114 / 2e-29 AT3G11340 381 / 3e-129 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Lus10016459 [exp] 112 / 9e-29 AT5G59590 357 / 3e-119 UDP-glucosyl transferase 76E2 (.1) Lus10024584 [exp] 92 / 3e-21 AT1G22400 570 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G195300 [exp] 221 / 3e-70 AT3G11340 485 / 6e-170 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Potri.010G195500 [exp] 212 / 1e-66 AT3G11340 483 / 3e-169 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Potri.010G195600 [exp] 209 / 4e-65 AT3G55700 515 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.001G245900 [exp] 119 / 2e-31 AT3G46660 452 / 7e-157 UDP-glucosyl transferase 76E12 (.1) Potri.006G039300 [exp] 95 / 2e-22 AT5G59590 347 / 2e-115 UDP-glucosyl transferase 76E2 (.1) Potri.016G022500 [exp] 86 / 2e-19 AT1G22340 535 / 0.0 UDP-glucosyl transferase 85A7 (.1) Potri.001G312600 [exp] 81 / 1e-17 AT1G22360 586 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.007G132400 [exp] 79 / 7e-17 AT1G22340 527 / 0.0 UDP-glucosyl transferase 85A7 (.1) Potri.006G023600 [exp] 77 / 2e-16 AT1G22380 526 / 0.0 UDP-glucosyl transferase 85A3 (.1) Potri.017G052232 [exp] 77 / 2e-16 AT1G22360 622 / 0.0 UDP-glucosyl transferase 85A2 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040244 pacid=23174168 polypeptide=Lus10040244 locus=Lus10040244.g ID=Lus10040244.BGIv1.0 annot-version=v1.0 ATGGAGGAAGCCCTAAGAGAATCACACATTAAGCAAAAGAAGAACCGCAGGCTATTACTCTTCCCTACTCCACTACGAGGCTACATCAACCCTATGATCC AGCTCGCCCACATTCTTTACTCAAAAGGTTTCTCCATCACCATACTCCACAGCAATTTCAACTCCCCAGATCCTTCCAAGTACCCATTTTTCAGCTTCCA TATAATCCCGGAAGGCTTCTCTAACAAGGAAGCATCTGAAATGGATGCAATCCCTCTCATTGCACTCCTTAACGAGATGTTAACTGATACTTTACATGAC CACTTGGCCAAGTTGTTATCGGGGAGCGTTGAGGAGGAAGAGCCTATAGTTTCATTGATCGTCGATGCGAGCTGGCATTTCACTCAGGGAGTTGCAGAGG ATCTTAAGCTTTCTAGGTTCGTGTTGCGGACTAGTAATGCTTGCTCCTTCCTTGTTTACAATGCTTTCCCACTTCTACTGGAGACAGGCTACATGCCTGT TACAGATTTGCGACTCGAAGAGCTTGTTTCGGAGCTTTCCCCGTTGAGAGTGAAAGACTTACCTGATATAAAGATGAAAAAGCCAGATGATTTCTACAAT CTGGTTGCTGGAATGATAAGGGCAGTCAATGCTCTTCAGGTCTCATCTGGAATTCATGTGAAGACTTGGAGGAAGCTGCCTTAA
AA sequence Show only first row Show all	>Lus10040244 pacid=23174168 polypeptide=Lus10040244 locus=Lus10040244.g ID=Lus10040244.BGIv1.0 annot-version=v1.0 MEEALRESHIKQKKNRRLLLFPTPLRGYINPMIQLAHILYSKGFSITILHSNFNSPDPSKYPFFSFHIIPEGFSNKEASEMDAIPLIALLNEMLTDTLHD HLAKLLSGSVEEEEPIVSLIVDASWHFTQGVAEDLKLSRFVLRTSNACSFLVYNAFPLLLETGYMPVTDLRLEELVSELSPLRVKDLPDIKMKKPDDFYN LVAGMIRAVNALQVSSGIHVKTWRKLP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55700			UDP-Glycosyltransferase superf...		Lus10040244 [exp]	0	1
					Lus10040759 [exp]	4.8	0.7506
					Lus10043281 [exp]	10.0	0.7418
AT5G18960	FAR1_related	FRS12	FAR1-related sequence 12 (.1)		Lus10023137 [exp]	11.5	0.7324
					Lus10037930 [exp]	13.3	0.7293
AT2G36020		HVA22J	HVA22-like protein J (.1)		Lus10004215 [exp]	17.7	0.7059
AT1G02790		PGA4	polygalacturonase 4 (.1)		Lus10003782 [exp]	18.2	0.7290
AT3G50310		MKKK20, MAPKKK2...	MAPKK kinase 20, mitogen-activ...		Lus10029019 [exp]	19.9	0.6472
AT1G67623			F-box family protein (.1)		Lus10030790 [exp]	23.1	0.7212
AT2G48010		RKF3	receptor-like kinase in in flo...		Lus10008186 [exp]	23.4	0.6963
AT5G42230		SCPL41	serine carboxypeptidase-like 4...		Lus10023444 [exp]	32.6	0.7032

Compare expression of checked genes

Lus10040244 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.