Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11340 488 / 3e-171 UGT76B1 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) AT3G55700 450 / 5e-156 UDP-Glycosyltransferase superfamily protein (.1) AT5G05860 447 / 4e-155 UGT76C2 UDP-glucosyl transferase 76C2 (.1) AT5G05880 444 / 1e-153 UDP-Glycosyltransferase superfamily protein (.1) AT5G05870 418 / 2e-143 UGT76C1 UDP-glucosyl transferase 76C1 (.1) AT5G05890 417 / 4e-143 UDP-Glycosyltransferase superfamily protein (.1) AT5G05900 415 / 2e-142 UDP-Glycosyltransferase superfamily protein (.1) AT3G55710 410 / 5e-140 UDP-Glycosyltransferase superfamily protein (.1) AT3G46670 361 / 3e-121 UGT76E11 UDP-glucosyl transferase 76E11 (.1) AT5G59590 357 / 1e-119 UGT76E2 UDP-glucosyl transferase 76E2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004671 [exp] 482 / 2e-168 AT3G55700 450 / 4e-156 UDP-Glycosyltransferase superfamily protein (.1) Lus10037268 [exp] 476 / 9e-166 AT3G11340 447 / 1e-154 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Lus10004672 [exp] 461 / 1e-159 AT3G11340 417 / 1e-142 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Lus10040725 [exp] 403 / 1e-137 AT5G59590 408 / 9e-140 UDP-glucosyl transferase 76E2 (.1) Lus10016460 [exp] 400 / 2e-136 AT5G59590 400 / 2e-136 UDP-glucosyl transferase 76E2 (.1) Lus10016461 [exp] 390 / 1e-132 AT3G11340 381 / 3e-129 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Lus10016459 [exp] 373 / 2e-125 AT5G59590 357 / 3e-119 UDP-glucosyl transferase 76E2 (.1) Lus10004673 [exp] 343 / 3e-118 AT3G11340 236 / 1e-76 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Lus10024584 [exp] 291 / 2e-93 AT1G22400 570 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G195500 [exp] 562 / 0 AT3G11340 483 / 3e-169 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Potri.010G195600 [exp] 560 / 0 AT3G55700 515 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.010G195300 [exp] 552 / 0 AT3G11340 485 / 6e-170 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Potri.001G245900 [exp] 426 / 1e-146 AT3G46660 452 / 7e-157 UDP-glucosyl transferase 76E12 (.1) Potri.006G039300 [exp] 395 / 8e-134 AT5G59590 347 / 2e-115 UDP-glucosyl transferase 76E2 (.1) Potri.001G313000 [exp] 315 / 9e-103 AT1G22360 564 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.002G098400 [exp] 312 / 1e-101 AT1G22360 640 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052300 [exp] 305 / 4e-99 AT1G22360 603 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052166 [exp] 305 / 5e-99 AT1G22360 607 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.007G095000 [exp] 304 / 2e-98 AT1G22340 543 / 0.0 UDP-glucosyl transferase 85A7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10040246 pacid=23174005 polypeptide=Lus10040246 locus=Lus10040246.g ID=Lus10040246.BGIv1.0 annot-version=v1.0 ATGTCAGATATGAATACAGAAACAACCACCAACAACAACTCAAAATGCCTTGCAAGGCTAGTGTTATTTCCTCTGCCATTTCAAGGCCACATAAACCCCA TGTTCCAGCTCGCACATATCCTTCACTCGAGAGGATTCCACATCACCATAATCCACACCCAGTTCAACTCTCCAAACCCTGCAAATTACCCTCAGTTTTC TTTCATCTCAATCCAAGACGGGCTGCTGCAGAACCAGATATCAACAGAAGACGTGGTATCCCTCTTGACAATCCTCAATGCCAGATGTGTCGAGCCGTTC ACGAAATGCCTGGCCGAGTTATTTTCATCAGAATGTATTGCTTGCTTGATATCAGATCCAATTTGGCACTTTACTCAAACTGTGGCGGATGATCTTAAGC TCCCTAGAATTGTGCTTAGAACAAGCAGTGTCTGCTCTTTCCTTGCATATGCTAGCTTCCCATTCTTGAGGGAGAAAGGCCATCTTCTTCACAGCAATCA AGATCTTCAGCCAGAAGAAGATTTGCCAATGCTCCCCCCGCTTAAAGTTCGAGATCTTCCCATCATCGAAACACGACACCAAGAAATCTTCTACCAACTG ATTGTTACAGCAGTCAAGCAAATAAGGGCATCTTCAGGAATGATAATGAACACGTTTGAAGAGCTTGAGAGAGTTTCACTAGCAACTCTGAGCCAGGATT TCCCCCATACACCGATCTTCGCGATCGGTCCATTTCACAAGTACTTTGGAAGCTCATCCAACAGCTTGTTAGCGCAAGACCAGAGCTGCATTTCCTGGCT TGACCATCAAGCTCGTGGTTCGGTACTCTATGTCAGTTTTGGAAGTCTTGTGATGATCAGCCAGAGTGAGTTCCAGGAGATAGCTTGGGGGATAGCTAAT AGCAACCAGCCCTTCTTGTGGGTCGTTCGACCTGGATTGGTTTTTGGGTCGGATTGGCTCGAGGGGTTGCCCGATGGGTTTATAGAGATTGTGAAGGGAA GAGGGCGGATTGTGAAATGGGCTCCGCAGCAAGAGGTGCTGGCACATCCGGCCACAGGTGGGTTCTGGACACACAATGGTTGGAATTCCACACTGGAGAG TGTATGTGAAGGTGTTCCTATGATTTGTCATCCCATAGCAGGGGATCAGATGGTAAATGCCAGGTATGTGAGTGATGTTTGGAGAATTGGGTTGCATTTG GAGAAAAAAGTGGAGAGAAAGGAGATTGAAAATGTTATCAGAAGATTAATGGTGGAACCAGAAGGTGAAGAACTGATGAAGAAGGTCAAGTATCTGAAGG AAAAGGCTGAGTTATGCCTAAAACAAGGTGGCTCTTCTAGTCTGTCACTGGAAAAGTTAACTAGTTACATTCTTTCATTTTAG
AA sequence Show only first row Show all	>Lus10040246 pacid=23174005 polypeptide=Lus10040246 locus=Lus10040246.g ID=Lus10040246.BGIv1.0 annot-version=v1.0 MSDMNTETTTNNNSKCLARLVLFPLPFQGHINPMFQLAHILHSRGFHITIIHTQFNSPNPANYPQFSFISIQDGLLQNQISTEDVVSLLTILNARCVEPF TKCLAELFSSECIACLISDPIWHFTQTVADDLKLPRIVLRTSSVCSFLAYASFPFLREKGHLLHSNQDLQPEEDLPMLPPLKVRDLPIIETRHQEIFYQL IVTAVKQIRASSGMIMNTFEELERVSLATLSQDFPHTPIFAIGPFHKYFGSSSNSLLAQDQSCISWLDHQARGSVLYVSFGSLVMISQSEFQEIAWGIAN SNQPFLWVVRPGLVFGSDWLEGLPDGFIEIVKGRGRIVKWAPQQEVLAHPATGGFWTHNGWNSTLESVCEGVPMICHPIAGDQMVNARYVSDVWRIGLHL EKKVERKEIENVIRRLMVEPEGEELMKKVKYLKEKAELCLKQGGSSSLSLEKLTSYILSF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11340		UGT76B1	UDP-dependent glycosyltransfer...		Lus10040246 [exp]	0	1
AT5G24120		ATSIG5, SIG5, S...	SIGMA FACTOR 5, sigma factor E...		Lus10014934 [exp]	5.0	0.8983
AT1G50250		FTSH1	FTSH protease 1 (.1)		Lus10012277 [exp]	5.7	0.8893
AT5G49740		ATFRO7, FRO7	ferric reduction oxidase 7 (.1...		Lus10007586 [exp]	6.2	0.8954
AT2G35490			Plastid-lipid associated prote...		Lus10030987 [exp]	11.2	0.8861
AT5G24120		ATSIG5, SIG5, S...	SIGMA FACTOR 5, sigma factor E...		Lus10038823 [exp]	12.0	0.8875
AT2G24820		AtTic55, TIC55-...	translocon at the inner envelo...		Lus10042424 [exp]	12.4	0.8728
AT3G56140			Protein of unknown function (D...		Lus10010224 [exp]	15.8	0.8485
					Lus10017075 [exp]	15.9	0.8638
AT5G64840		ABCF5, ATGCN5	ATP-binding cassette F5, gener...		Lus10005798 [exp]	16.1	0.8821
AT5G06530		AtABCG22, ABCG2...	Arabidopsis thaliana ATP-bindi...		Lus10015993 [exp]	19.2	0.8348

Compare expression of checked genes

Lus10040246 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.