Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39870 70 / 2e-13 unknown protein AT3G55690 53 / 7e-08 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004675 [exp] 488 / 8e-175 AT2G39870 100 / 1e-23 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G195800 [exp] 160 / 2e-45 AT3G54000 94 / 3e-21 unknown protein Potri.008G062200 [exp] 149 / 2e-41 AT2G39870 90 / 9e-20 unknown protein Potri.006G093000 [exp] 53 / 1e-07 AT3G54000 79 / 9e-16 unknown protein Potri.016G105000 [exp] 52 / 2e-07 AT3G54000 73 / 4e-14 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040247 pacid=23173880 polypeptide=Lus10040247 locus=Lus10040247.g ID=Lus10040247.BGIv1.0 annot-version=v1.0 ATGGCTACCCTGTCTGTTCCGACGAAGCCCGAGTTCAACTTCCCCTCCGAGTTCCCTTACGAGTTCGACTCTGATGTCGCCGGCGGCGACAACGTCCACG ACGAGGACGATTTCTTCGCCGGGTTGACTCGCCGCCTGACTCAGCAGCTCTCCCTCAAGCCACAGAGGAAGCGGGTCGTGGTCGGGTCGCCCGAGTCGAC GCTGAGTGGACTCGGAAGCATGTCGGTCTCGAGCAATGGGAGCCCCAACGGTGACCTGTCCCCCACCGAAACGACGCCTTTCGGTGCTAAAAACGACACG TGGGACCTGATTTACGCCGCGGCTGACCAGGTCGCGAAGCTTAAGATGAAAGCTGAAGCGCAAATCTACAGTAAGCCGACCGGGTATGTGAACAGGACTC GAAATCCAACTGGGTTTTACTCCTTTGACATTAATGCCCCTCCGAAAAACCAGTACCAGCAGTTTAGTCAAGATCCACCTCGAGCTTCAAAGGAACAGTA CCCTTGGCCGGAGAACTGGCAGCAGATCTCCTTTGGAAACAGAGCCAGAAGAGTTATTAGCTACGAGAATTCCAGATCTGTTGTTCGTCCTCCTCCGTCG CCGTCGCCGTCGCAGTCCATTTGGTCGCCGCCGATTCAAAATCCTAACTACCGAACCCAGACGAATTCGGCGTTTCTGGGCGGCGGATCTGGTCCAAAAA GAGGTAGTGCCGGTACAGGGGTTTTCCTCCCTCGGAGATACGGAATCGCTCCACCAGATTCCAAGAAGCAGCCTACTCCTTGCTCGACGGTTCTACTTCC TGCGAAAGTAGTGCATGCCCTTAACTTGAACCTCAACGAAAATGAACAAGCTCCTCCCCAGCCGCTGTTTAACCCAGCTTTCTCAGCTGATTACGCGGCT CTGTTGGCGAGGAGGAATGCTGTATTGACCCAGCTGCAGAACAAGAGAGCAATGCTGCGAAGTACTGAAGCTGGAGGATTCAGCAGTCATGAGAGTCGGC TTCCTCAGGATTGGACCTACTGA
AA sequence Show only first row Show all	>Lus10040247 pacid=23173880 polypeptide=Lus10040247 locus=Lus10040247.g ID=Lus10040247.BGIv1.0 annot-version=v1.0 MATLSVPTKPEFNFPSEFPYEFDSDVAGGDNVHDEDDFFAGLTRRLTQQLSLKPQRKRVVVGSPESTLSGLGSMSVSSNGSPNGDLSPTETTPFGAKNDT WDLIYAAADQVAKLKMKAEAQIYSKPTGYVNRTRNPTGFYSFDINAPPKNQYQQFSQDPPRASKEQYPWPENWQQISFGNRARRVISYENSRSVVRPPPS PSPSQSIWSPPIQNPNYRTQTNSAFLGGGSGPKRGSAGTGVFLPRRYGIAPPDSKKQPTPCSTVLLPAKVVHALNLNLNENEQAPPQPLFNPAFSADYAA LLARRNAVLTQLQNKRAMLRSTEAGGFSSHESRLPQDWTY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39870			unknown protein		Lus10040247 [exp]	0	1
AT4G37750	AP2_ERF	DRG, CKC1, ANT	DRAGON, COMPLEMENTING A PROTEI...		Lus10007719 [exp]	1.7	0.9523
AT5G62740		AtHIR4, ATHIR1	hypersensitive induced reactio...		Lus10007268 [exp]	1.7	0.9341
AT4G37750	AP2_ERF	DRG, CKC1, ANT	DRAGON, COMPLEMENTING A PROTEI...		Lus10018655 [exp]	3.2	0.9413
AT1G11120			unknown protein		Lus10018564 [exp]	3.5	0.9194
AT2G25270			unknown protein		Lus10001945 [exp]	3.9	0.9295
AT2G38370			Plant protein of unknown funct...		Lus10025249 [exp]	4.5	0.9310
AT3G48970			Heavy metal transport/detoxifi...		Lus10027470 [exp]	4.5	0.9105
AT3G15040			Protein of unknown function, D...		Lus10021309 [exp]	5.1	0.9055
AT1G62050			Ankyrin repeat family protein ...		Lus10002942 [exp]	5.7	0.9096
AT2G30933			Carbohydrate-binding X8 domain...		Lus10001516 [exp]	5.7	0.9028

Compare expression of checked genes

Lus10040247 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.