Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05940 635 / 0 ATROPGEF5, ROPGEF5 ROP guanine nucleotide exchange factor 5 (.1) AT5G02010 565 / 0 ATROPGEF7, ROPGEF7 RHO guanyl-nucleotide exchange factor 7 (.1) AT3G55660 506 / 5e-174 ATROPGEF6, ROPGEF6 ROP (rho of plants) guanine nucleotide exchange factor 6 (.1) AT4G38430 461 / 1e-156 ATROPGEF1, ROPGEF1 rho guanyl-nucleotide exchange factor 1 (.1) AT4G00460 445 / 1e-151 ATROPGEF3, ROPGEF3 RHO guanyl-nucleotide exchange factor 3 (.1.2) AT1G01700 429 / 5e-145 ATROPGEF2, ROPGEF2 RHO guanyl-nucleotide exchange factor 2 (.1) AT2G45890 402 / 6e-135 RHS11, ATROPGEF4, ROPGEF4 ROOT HAIR SPECIFIC 11, RHO guanyl-nucleotide exchange factor 4 (.1) AT3G24620 377 / 3e-124 ATROPGEF8, ROPGEF8 RHO guanyl-nucleotide exchange factor 8 (.1) AT4G13240 371 / 5e-122 ATROPGEF9, ROPGEF9 RHO guanyl-nucleotide exchange factor 9 (.1) AT1G52240 363 / 4e-118 PIRF1, ATROPGEF11, ROPGEF11 phytochrome interacting RopGEF 1, RHO guanyl-nucleotide exchange factor 11 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004676 [exp] 1029 / 0 AT5G05940 667 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Lus10009874 [exp] 717 / 0 AT5G05940 643 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Lus10000399 [exp] 706 / 0 AT5G05940 630 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Lus10021500 [exp] 592 / 0 AT5G02010 664 / 0.0 RHO guanyl-nucleotide exchange factor 7 (.1) Lus10022601 [exp] 591 / 0 AT5G02010 662 / 0.0 RHO guanyl-nucleotide exchange factor 7 (.1) Lus10023983 [exp] 456 / 3e-154 AT4G38430 696 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Lus10025101 [exp] 452 / 2e-152 AT4G38430 683 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Lus10005644 [exp] 412 / 5e-138 AT4G38430 520 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Lus10021234 [exp] 409 / 1e-136 AT4G38430 525 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G062000 [exp] 728 / 0 AT5G05940 664 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Potri.010G196000 [exp] 724 / 0 AT5G05940 659 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Potri.006G092600 [exp] 631 / 0 AT5G02010 676 / 0.0 RHO guanyl-nucleotide exchange factor 7 (.1) Potri.016G104400 [exp] 622 / 0 AT5G02010 632 / 0.0 RHO guanyl-nucleotide exchange factor 7 (.1) Potri.004G179742 [exp] 472 / 9e-161 AT4G38430 729 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Potri.009G140100 [exp] 469 / 1e-159 AT4G38430 715 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Potri.014G084200 [exp] 457 / 4e-156 AT4G00460 673 / 0.0 RHO guanyl-nucleotide exchange factor 3 (.1.2) Potri.002G159700 [exp] 449 / 4e-153 AT4G00460 662 / 0.0 RHO guanyl-nucleotide exchange factor 3 (.1.2) Potri.005G247100 [exp] 445 / 1e-150 AT4G38430 553 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Potri.002G014100 [exp] 430 / 9e-145 AT4G38430 592 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03759 [flax] [poplar] PRONE PRONE (Plant-specific Rop nucleotide exchanger)
Representative CDS sequence Show only first row Show all	>Lus10040248 pacid=23173960 polypeptide=Lus10040248 locus=Lus10040248.g ID=Lus10040248.BGIv1.0 annot-version=v1.0 ATGGACACTGTGGGGAAGAAGAGAGTTGGGTCTGAATCTGGGACGACCAGTAGCTGCAACTATGTGGAATTCAGCTCCACCACTGAAGGAAGGAGCAGTC TCGGTAGTGACTCTACTCCTTCTTCTGCTTCTCGTTCTACTGGTCCTTTGGGTTGGCCGATAAAGAAGTCCGGCGAGAGGAAGAGTTCGTTGGTACCTCG GAATGAAAGAGATGAAGGGAATGGTAGCCGGTTTGAGGATTCCAAGCTCAAATCCAAGAATTCTGATGTGGATTTGATGAAGGAGAGGTTTGCAAAATTG TTGCTTGGAGAGGACATGTCAGGTTCTGGGAAAGGGGTTTGTACTGCTATGGCTATCTCCAATGCTATTACCAATCTATGTGCTTCTGTGTTCGGGCAAC TGTGGAGGCTCGAGCCGATAGATCCAGATAAGAAATTACTGTGGAGAAGGGAGATCGAGTGGCTTCTTTGTGTTAGTGATCATATTGTAGAGTTAGTTCC CTCTTGTCAAACGTATCCTGACGGCAGTAAGCTTGAGGTGATGACTTGCAGGCCAAGGTCAGACCTTTTCATGAATCTCCCAGCTCTACGCAAGCTTGAC AATATGCTTCTTGAAGTACTAGATAGTTTCACGGGGACGGACTTCTGGTATGTGGATCAAGGGATTGTAGCTACAGATGTATCATCAGAGGGATCAGCCT CGTTTCGAAAAACGATGCAGCGACAAGAGGATAAATGGTGGCTACCGGTTCCCCGTGTTCCTGCTGGCGGTCTGACCGATGATTCGAGAAAGCAGTTGAA CCACACTCGCGAGTGCAGCAATCAGATACTCAAAGCTGTGATGGCAATCAACGAAGCTGCTCTAGCTGAGATGGATGTTCCTGACTCCTACTTGGAAACT CTTCCCAAGAATGGGAGGGCTTGCCTTGGGGACTTCATATATCGCTACATGATTTCAGATAAGTTCTATCCAGACTGCCTACTGGACTGTCTTGACCTTT CTTCCGAGCATGCTGCTCTGGACATTGCAAACCGTGTTGAATCTGCCATCTATGTATGGCGGCGAAAATCACAAGCTCAAAAACCGCCATCAACAACACA TTGCCGATCGTCTTCAAGGTCTTCGTGGGAAATGGTCAAGGACTTGATGGTCGACGGAGATAAGAGGGAAATGCTTGCAGAAAGAGCTGAAAGCCTCCTT CTTTGCCTGAAGCAGCGCTTTCCAAGTCTAACCCAGACTGCACTAGACACCAGCAAACTCCAATTCAACAAGGATGTTGGGAAGTCCATTCTGGAGAGCT ATTCGCGAGTGCTCGAGAGCTTGGCATTCAACATTGTTGCACGCATCGACGATTTGCTATACGTGGATGATCTGACGAAATGTTCAGATAAGCTGTCATT GGTCCCAACAGTGAGCGTGATATCACACAAGAAGGTCTCCATCCCATTCTCCTCCTCCGCCGAGTCTTCCTTAGGCACTCCTTATAACAAACCACCAACA AGTATGGCCAGAACACCGGGAGGGTTCTCGCCTGCTCCTCATCCTCTTATCAGCCCTGCAAGAGGGGAGAGAACTCCATTTCTGAACACTACCAACACCA TCACCATCACCACCACTACCAACAATAACAACAAGAATGTTCGTCGGGGGTTCGGAGTGAAGAAGGCATTGTCAAATTATCTGGGTGTCGACTCGAAATC CAAAGTCTGCGGCAACAATCCAACTGATGCTTTGTGTTTGGATCACAGCAGGCGTCACGGGAAGAGCACTGTATCGTACCAGAATGAGAATAGGCAGCAA CAGAAGTATACCGTTCCATGA
AA sequence Show only first row Show all	>Lus10040248 pacid=23173960 polypeptide=Lus10040248 locus=Lus10040248.g ID=Lus10040248.BGIv1.0 annot-version=v1.0 MDTVGKKRVGSESGTTSSCNYVEFSSTTEGRSSLGSDSTPSSASRSTGPLGWPIKKSGERKSSLVPRNERDEGNGSRFEDSKLKSKNSDVDLMKERFAKL LLGEDMSGSGKGVCTAMAISNAITNLCASVFGQLWRLEPIDPDKKLLWRREIEWLLCVSDHIVELVPSCQTYPDGSKLEVMTCRPRSDLFMNLPALRKLD NMLLEVLDSFTGTDFWYVDQGIVATDVSSEGSASFRKTMQRQEDKWWLPVPRVPAGGLTDDSRKQLNHTRECSNQILKAVMAINEAALAEMDVPDSYLET LPKNGRACLGDFIYRYMISDKFYPDCLLDCLDLSSEHAALDIANRVESAIYVWRRKSQAQKPPSTTHCRSSSRSSWEMVKDLMVDGDKREMLAERAESLL LCLKQRFPSLTQTALDTSKLQFNKDVGKSILESYSRVLESLAFNIVARIDDLLYVDDLTKCSDKLSLVPTVSVISHKKVSIPFSSSAESSLGTPYNKPPT SMARTPGGFSPAPHPLISPARGERTPFLNTTNTITITTTTNNNNKNVRRGFGVKKALSNYLGVDSKSKVCGNNPTDALCLDHSRRHGKSTVSYQNENRQQ QKYTVP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05940		ATROPGEF5, ROPG...	ROP guanine nucleotide exchang...		Lus10040248 [exp]	0	1
AT1G72250			Di-glucose binding protein wit...		Lus10013714 [exp]	3.0	0.9667
AT1G77720		PPK1	putative protein kinase 1 (.1)		Lus10028085 [exp]	3.5	0.9642
AT1G79500		ATKDSA1, KDSA	Aldolase-type TIM barrel famil...		Lus10001765 [exp]	6.4	0.9283
AT1G65710			unknown protein		Lus10010952 [exp]	6.6	0.9625
					Lus10037590 [exp]	7.3	0.9627
AT2G34190			Xanthine/uracil permease famil...		Lus10029238 [exp]	7.3	0.9231
AT2G31320		ATPARP2	poly(ADP-ribose) polymerase 2 ...		Lus10033871 [exp]	7.9	0.9412
AT5G05240			Uncharacterised conserved prot...		Lus10034236 [exp]	8.0	0.9197
AT3G01015			TPX2 (targeting protein for Xk...		Lus10030836 [exp]	8.4	0.9467
AT1G72250			Di-glucose binding protein wit...		Lus10005582 [exp]	8.7	0.9574

Compare expression of checked genes

Lus10040248 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.