Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59190 438 / 6e-143 subtilase family protein (.1) AT5G03620 434 / 2e-140 Subtilisin-like serine endopeptidase family protein (.1) AT4G00230 412 / 4e-132 XSP1 xylem serine peptidase 1 (.1) AT5G58830 408 / 2e-131 Subtilisin-like serine endopeptidase family protein (.1) AT5G59120 409 / 3e-131 ATSBT4.13 subtilase 4.13 (.1) AT5G58840 406 / 1e-130 Subtilase family protein (.1) AT5G59090 404 / 3e-129 ATSBT4.12 subtilase 4.12 (.1.2.3) AT3G46840 402 / 2e-128 Subtilase family protein (.1) AT5G59100 399 / 2e-127 Subtilisin-like serine endopeptidase family protein (.1) AT3G46850 394 / 2e-125 Subtilase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004682 [exp] 951 / 0 AT5G59190 555 / 0.0 subtilase family protein (.1) Lus10009867 [exp] 859 / 0 AT5G59190 629 / 0.0 subtilase family protein (.1) Lus10009868 [exp] 538 / 0 AT5G03620 605 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10040253 [exp] 535 / 4e-180 AT5G59090 640 / 0.0 subtilase 4.12 (.1.2.3) Lus10004685 [exp] 532 / 2e-178 AT4G00230 647 / 0.0 xylem serine peptidase 1 (.1) Lus10004683 [exp] 517 / 2e-173 AT5G59190 600 / 0.0 subtilase family protein (.1) Lus10000396 [exp] 484 / 1e-160 AT5G59190 477 / 4e-160 subtilase family protein (.1) Lus10004686 [exp] 457 / 3e-149 AT5G59100 611 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10002964 [exp] 445 / 2e-144 AT5G59100 624 / 0.0 Subtilisin-like serine endopeptidase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G196700 [exp] 585 / 0 AT5G59100 579 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.010G196800 [exp] 585 / 0 AT5G59100 599 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.010G196900 [exp] 575 / 0 AT5G59100 657 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.003G120101 [exp] 492 / 2e-164 AT5G59190 536 / 0.0 subtilase family protein (.1) Potri.012G133200 [exp] 486 / 5e-160 AT5G59090 646 / 0.0 subtilase 4.12 (.1.2.3) Potri.006G114500 [exp] 439 / 7e-143 AT5G03620 874 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.002G151900 [exp] 437 / 4e-142 AT4G00230 938 / 0.0 xylem serine peptidase 1 (.1) Potri.009G038001 [exp] 436 / 1e-141 AT3G46850 794 / 0.0 Subtilase family protein (.1) Potri.014G074500 [exp] 414 / 7e-135 AT4G00230 790 / 0.0 xylem serine peptidase 1 (.1) Potri.009G037900 [exp] 412 / 1e-132 AT5G59100 777 / 0.0 Subtilisin-like serine endopeptidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0570 [flax] [poplar] PPP-I PF05922 [flax] [poplar] Inhibitor_I9 Peptidase inhibitor I9 CL0570 [flax] [poplar] PF00082 [flax] [poplar] Peptidase_S8 Subtilase family
Representative CDS sequence Show only first row Show all	>Lus10040251 pacid=23174001 polypeptide=Lus10040251 locus=Lus10040251.g ID=Lus10040251.BGIv1.0 annot-version=v1.0 ATGGAAGGGCAGCTGCAACAAGTCAGGAAATTTTCACCTGCAACAAGTAAACTATCGCAGTTCTTTAGCCTCTTTCATTATGATGTGATACGATCATTTC GTCTGATTCCTTCCGCAGCAAAGATAATTGGAGCAAAGTACTACAGGATTTCTAATAACTTCACTTATGATATGGCTTCACCAAGGGATACAGAAGGCCA CGGCTCCCATACCGCATCAACAGCAGCAGGTAACTTCGTTCCCAAGGCAAGCCTTGAAGGACTTGGCACGGGAACAGCTCGAGGAGGCATTCCATCTGCA CGGATTGCGGTCTATAAGGTCTCCTGGGCTGACGGTTGTAACGATGTTGATGTTCTAGCAGCGTTTGATGATGCTATTGCTGACGGAGTTGACATAATCT CTGCGTCCATGGGAGGAGCTAAGCCTAGAGGTTACTTCACGGACTCAATCGCCATTGGGTCGTTCCATGCTATGCAACATGGCATTCTTACCTCAACCGC GGCTGGCAATGCCGGTCCTAAACCACAATCGGTTTTCAATGTCGCGCGTTGGCTTCTTTCCATGGCGACTAGCAGCATAGACAGGAAGTTTGTCACAAAA GTTCAGCTAGGAAATGGAGCTTCCTATGAGGGAGTTTCAATCAATACAATTGATCTTCATCCCGCTATGTATCCTGTTATCTATGGTGGTCTTGCCCCAA AGTTGAAGAGACCTAATGTCACTGCAGCCAGGCAGTGGAGAATCAGGTCTGCTGCAGGAGGAACAGGTGCGATAATGCAAGACAGCAAGTACAACGATGT GGCTTTCAGTGGTGCTGTGCCCGCTGCCCACTTTGGTCAAGATGTTGGATCCAAAATCTCAGCTTATTTGAAACAAACAAAAAATGCCACTGCAACACTG TTCAAGAGTACGCACCGAAGGGATGAATCGGCCCCGTTTATAGTCGGGTTTTTGTCGAGAGGGCCTAATGCCATAAACGAAGACATCCTCAAGCCTGACA TTGCAGCTCCTGGTTCAAACATCCTGGCTGCTTGGTCTCCAGCTACCACAGTGACAGGGCTAATGGGAGATAAAAGAGTGACTGAATACAACATAATGTC AGGAACATCCATGGCTTGTCCTCATGCAAGTGGTGTAGCTGCGTATGTCAAGTCCTCTCATCCAACCTGGTCCCCTGCTGCCCTAAGGTCTGCTCTAATG ACAACAGCAATGCCGATGAGCCGTAACAAGAATCAGGATGCAGAATTCGCGTACGGGTCAGGGCTCATAAACCCAAGAAAGGCAGTAGATCCTGGTTTAG TATACGATGCCTCTGAAGAAAATTATGTTCACTTCTTGTGCGGACATCGCTACAACAGCACACAAATACAGGTCATCACCGGCAAAGACATCCGGTGCTC CAACGAAAAGAAGCTCGCCATTTGGGATCTCAACTACCCTTCATTTACCTTGTCTTCCAACTCTGGCGGGACAGTGACAAGGGTTTTCCATCGAACCGTA ACGAATGTGGGGAACCATGCATGCAGTTACACGGTACAAGTGAAGGCTCCTAAAGAACTTATGGTCAAAGTTACACCTGAAGTTCTGTTTTTCCAGTCTG TTGGAGAGAGCAAGTCGTTTAGTGTAAGTGTGACGGCTAAGTTATTGGGTAAAAAGGATGATGCAGGGGATTCGATCGTGTACAGCTACAGGAAGAGCTT CAATGGGTTTGCTGCAATGTTAACAGCTGATGAAGTGCAGAAACTGGCTGGAATGGAGGGTGTGGTTTCAGTGTTCCCCAATGGGAAGAAGGAACTCCAC ACTACTAAATCATGGAGCTACGTGGGACTCCATGAGAAAGTTGAAAGGAGACCTACTTCTGAAGGAGATATCATTGTTGGTGTATTGGACACTGGAATCT GGCCTGAATCTGAAAGCTTCAGTGACCAAAGATTTGGTCCACCGCCTGAAAAATGGAAGGGAACTTGCACTGGACCAAATTTCCCCTGCAACAACAAAAT CATAGGAGCAAGGTTCTACAGGAGCACAGGAAACCTCGTGGGCAACGAAGTCGATTCACCAAGAGATACACAAGGCCACGGAAGCCACACAGCATCAACA GCAGTAGGTAACTTGGAATCCAAGGCAAGCATGAAAGGCATTGGTGAAGGAACAGCTAGAGGAGCAGTTCCTTCAGCCAGGATTGCGGTCTACAAAGTCT GCTGGTCTGACTCCTGCCACAACGCCGATATCTTGGATGCATTTGACGATGAAATTTCCGATGGAGTCAACCTGATCTCCGTCTCCCTCGGAGGGAGCTT CGTAATTGACTACTTCCGAGATTCATTAGCAATTAGATCCTACCATGCTATGAAAAAAGGCATTCTGACATCACTTTCTGCTGGTAACTCTGGTCCTGTA CCTGGAACTGTGACTAGTGTTGCACCTTGCGGGCTATCGGTGGCTGCTGCTACCATTGATAGGAAGTATGTCACCAAAGTTTAG
AA sequence Show only first row Show all	>Lus10040251 pacid=23174001 polypeptide=Lus10040251 locus=Lus10040251.g ID=Lus10040251.BGIv1.0 annot-version=v1.0 MEGQLQQVRKFSPATSKLSQFFSLFHYDVIRSFRLIPSAAKIIGAKYYRISNNFTYDMASPRDTEGHGSHTASTAAGNFVPKASLEGLGTGTARGGIPSA RIAVYKVSWADGCNDVDVLAAFDDAIADGVDIISASMGGAKPRGYFTDSIAIGSFHAMQHGILTSTAAGNAGPKPQSVFNVARWLLSMATSSIDRKFVTK VQLGNGASYEGVSINTIDLHPAMYPVIYGGLAPKLKRPNVTAARQWRIRSAAGGTGAIMQDSKYNDVAFSGAVPAAHFGQDVGSKISAYLKQTKNATATL FKSTHRRDESAPFIVGFLSRGPNAINEDILKPDIAAPGSNILAAWSPATTVTGLMGDKRVTEYNIMSGTSMACPHASGVAAYVKSSHPTWSPAALRSALM TTAMPMSRNKNQDAEFAYGSGLINPRKAVDPGLVYDASEENYVHFLCGHRYNSTQIQVITGKDIRCSNEKKLAIWDLNYPSFTLSSNSGGTVTRVFHRTV TNVGNHACSYTVQVKAPKELMVKVTPEVLFFQSVGESKSFSVSVTAKLLGKKDDAGDSIVYSYRKSFNGFAAMLTADEVQKLAGMEGVVSVFPNGKKELH TTKSWSYVGLHEKVERRPTSEGDIIVGVLDTGIWPESESFSDQRFGPPPEKWKGTCTGPNFPCNNKIIGARFYRSTGNLVGNEVDSPRDTQGHGSHTAST AVGNLESKASMKGIGEGTARGAVPSARIAVYKVCWSDSCHNADILDAFDDEISDGVNLISVSLGGSFVIDYFRDSLAIRSYHAMKKGILTSLSAGNSGPV PGTVTSVAPCGLSVAAATIDRKYVTKV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59190			subtilase family protein (.1)		Lus10040251 [exp]	0	1
AT4G12320		CYP706A6	"cytochrome P450, family 706, ...		Lus10024573 [exp]	1.0	0.8543
AT4G24040		TREHALASE1, ATT...	trehalase 1 (.1)		Lus10032434 [exp]	3.5	0.7838
AT4G10120		ATSPS4F	Sucrose-phosphate synthase fam...		Lus10006184 [exp]	4.7	0.7738
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Lus10022104 [exp]	5.1	0.7659
AT5G36930			Disease resistance protein (TI...		Lus10002249 [exp]	6.3	0.7361
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10012508 [exp]	6.9	0.7547
AT1G06640			2-oxoglutarate (2OG) and Fe(II...		Lus10013314 [exp]	7.7	0.7690
AT1G15000		SCPL50	serine carboxypeptidase-like 5...		Lus10042334 [exp]	9.4	0.7938
AT5G25900		ATKO1, CYP701A3...	CYTOCHROME P450 701 A3, ARABID...		Lus10032747 [exp]	10.5	0.8184
					Lus10021979 [exp]	11.0	0.7224

Compare expression of checked genes

Lus10040251 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.