Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59090 582 / 0 ATSBT4.12 subtilase 4.12 (.1.2.3) AT5G03620 576 / 0 Subtilisin-like serine endopeptidase family protein (.1) AT5G59120 570 / 0 ATSBT4.13 subtilase 4.13 (.1) AT5G59100 566 / 0 Subtilisin-like serine endopeptidase family protein (.1) AT4G00230 562 / 0 XSP1 xylem serine peptidase 1 (.1) AT5G58830 556 / 0 Subtilisin-like serine endopeptidase family protein (.1) AT5G58840 553 / 0 Subtilase family protein (.1) AT5G59190 550 / 0 subtilase family protein (.1) AT3G46850 544 / 0 Subtilase family protein (.1) AT3G46840 542 / 0 Subtilase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004685 [exp] 1302 / 0 AT4G00230 647 / 0.0 xylem serine peptidase 1 (.1) Lus10009867 [exp] 931 / 0 AT5G59190 629 / 0.0 subtilase family protein (.1) Lus10009868 [exp] 883 / 0 AT5G03620 605 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10004683 [exp] 878 / 0 AT5G59190 600 / 0.0 subtilase family protein (.1) Lus10000396 [exp] 692 / 0 AT5G59190 477 / 4e-160 subtilase family protein (.1) Lus10004686 [exp] 638 / 0 AT5G59100 611 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10004682 [exp] 631 / 0 AT5G59190 555 / 0.0 subtilase family protein (.1) Lus10002964 [exp] 630 / 0 AT5G59100 624 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10042555 [exp] 604 / 0 AT5G59100 603 / 0.0 Subtilisin-like serine endopeptidase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G196800 [exp] 907 / 0 AT5G59100 599 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.010G196700 [exp] 840 / 0 AT5G59100 579 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.010G196900 [exp] 786 / 0 AT5G59100 657 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.012G133200 [exp] 682 / 0 AT5G59090 646 / 0.0 subtilase 4.12 (.1.2.3) Potri.009G038001 [exp] 605 / 0 AT3G46850 794 / 0.0 Subtilase family protein (.1) Potri.006G114500 [exp] 603 / 0 AT5G03620 874 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.003G120101 [exp] 581 / 0 AT5G59190 536 / 0.0 subtilase family protein (.1) Potri.002G151900 [exp] 573 / 0 AT4G00230 938 / 0.0 xylem serine peptidase 1 (.1) Potri.009G037900 [exp] 568 / 0 AT5G59100 777 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.005G067200 [exp] 499 / 2e-167 AT2G04160 786 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0570 [flax] [poplar] PPP-I PF05922 [flax] [poplar] Inhibitor_I9 Peptidase inhibitor I9 CL0570 [flax] [poplar] PF00082 [flax] [poplar] Peptidase_S8 Subtilase family CL0364 [flax] [poplar] Leu-IlvD PF02225 [flax] [poplar] PA PA domain
Representative CDS sequence Show only first row Show all	>Lus10040253 pacid=23174107 polypeptide=Lus10040253 locus=Lus10040253.g ID=Lus10040253.BGIv1.0 annot-version=v1.0 ATGGGCGACCGTCCAAAGACTGATATTCCAGCTTCTGCACTTCACTCCAGCTTGCTTCAGCACATAACTGGCAGTGCCAAGCTTGCCTCCGAGTCGTTGA TCTGCAGCTACCACAGGAGCTTCAATGGGTTCGCCGCCAGGCTGACAAAGGCTGAGAAGAACAAGCTCTCTGCCTATGAAGGTGTAGTTTCTGTGTTTCC TAGTAAAATTCGGAAGCTACATACCACTAGGTCATGGGATTTCATCGGCTTCCCCCAAAATGTCACGAGATCCACCGGAGAGAGCGACGTCATCGTCGGA ATGCTCGACACCGGAGTTTGGCCGGAATCCAAGAGCTTCAATGATTCTGGGTATGGCCCACCTCCGAAGAAATGGAAGGGTTCTTGCCAATCCTCCAATT TCACCTGCAACAATAAGATCATTGGAGCCAAGGCCTACAACGCTGAAGGAAAACTCACTGCATCAGAGAAACCATCACCAAGAGACACAGAAGGACATGG AACTCACACTGCATCCACAGCAGCAGGGACCATTGTCACTCCGGCCAGTCTCCTCGGACTCGCCTCTGGCACTGCCCGAGGAGGGGTCCCCTCTGCTCGG ATTGCGGTCTACAAGATCTGCTGGGCTGCTGGATGTTCGGATGTCGATATTCTTGCAGCTTTCGACGATGCAATTGCTGACGGGGTTGACATAATCTCTC TCTCAGTAGGTGGCGCTCCGACTGAGTATTTCGAAGATCCTATTGCTATTGGAGCTTTCCATTCCATGAAGCATGGGATTCTCACGTCTAACTCGGCTGG TAACGAAGGTCCTTCCCCGAAAACTGTCTCGAATTGCTCCCCGTGGTCGCTCTCTGTTGGTGCTAGCACCATCGATAGAAAGTTTGCAACTGTTGTCAAG TTGGGTAATGGAAAATATCACAAGGGGAGCTCTCTAAACACTTTTCAACCCAAGGAAAAGACTTATCCTCTCATCTATGGAGGAGATGCACCAAATACAA CTGCAGGATATGATGGAAACGTTTCTAAGTACTGCTACTCGGATTCCTTGGATAAGAATCTGGTGCGAGGAAAAATTGTGTATTGCGATGTTAGCAGCGA GGGAGATGGACCGTTGGCCGCTGGTGCTGCTGGAGCTATAATGGGGAACTCGGACCAAGGCGATGTGATGTTTCCTTTCCCTTTGCCTGTTTCTCTCTTG ACCAAAACCGACGGAAATGAAGTTCTTGAGTACTCGAAATCAACTAGTGACCCAACTGCAGTGGTATTCAAAACCATTGACTACATGAACGACTCATCCA GCCCCTATGTCGTTTACTTCTCCTCGAGGGGGCCTAACCCGATTACAAGCGACATTCTCAAACCGGACCTGACAGCACCTGGAGTTAATATCCTGGCAGC ATGGTCAGAAGGTACAAGTATGTCGGGTCTTCCGGGAGACAAAAGAGTTGTTCCTTATAACATCATCTCCGGTACTTCCATGTCTTGCCCCCACGCAACT GCAGCAGCAGCTTATGTTAAATCGTTTCACCCTGATTGGTCCCCTGCCGCGGTCAAGTCTGCTCTAATGACAACAGCACGACCCTTCGATGCAAAGGACA ACACCGATGCTGAATTCGCATACGGGTCAGGCCAAATCAATCCCGCACGAGCTGCAGATCCAGGATTAGTCTACGATGCCGGGGAGACTGACTACGTAAA ATTACTTTGCGGCCAAGGATACTCAACCAAGCAACTACGGCTGGTCACGGGAGACCAGAACGCCTGTTCCGCAGCTACAAATGGAACCGTGTGGGATCTA AACTACCCATCGTTTGCTCTATCGTCGACCTCAGCAGGGCAATCCGTGAGCAAGGCGTTCCATAGAACCGTAACGAATTTTGGAACGGGGAACGCCACGT ATAAGGCAATAGTGAATGCAGCAGCAGGGCTTACGTTGAAAGTTGAGCCAAATGTGCTTTCTTTCAAGAGTGTTGGGGAGAAACAGTCGTTTGTCTTGAC TGTCTCGGCTGTGGTTGGAAACTCAACGACTTCTGGTTCTTTGGTGTGGAGTGATGGGGAGCATACTGTGAGGAGTCCTGTTGTGGCTTTTGTTTCATCA ACCGAGTAA
AA sequence Show only first row Show all	>Lus10040253 pacid=23174107 polypeptide=Lus10040253 locus=Lus10040253.g ID=Lus10040253.BGIv1.0 annot-version=v1.0 MGDRPKTDIPASALHSSLLQHITGSAKLASESLICSYHRSFNGFAARLTKAEKNKLSAYEGVVSVFPSKIRKLHTTRSWDFIGFPQNVTRSTGESDVIVG MLDTGVWPESKSFNDSGYGPPPKKWKGSCQSSNFTCNNKIIGAKAYNAEGKLTASEKPSPRDTEGHGTHTASTAAGTIVTPASLLGLASGTARGGVPSAR IAVYKICWAAGCSDVDILAAFDDAIADGVDIISLSVGGAPTEYFEDPIAIGAFHSMKHGILTSNSAGNEGPSPKTVSNCSPWSLSVGASTIDRKFATVVK LGNGKYHKGSSLNTFQPKEKTYPLIYGGDAPNTTAGYDGNVSKYCYSDSLDKNLVRGKIVYCDVSSEGDGPLAAGAAGAIMGNSDQGDVMFPFPLPVSLL TKTDGNEVLEYSKSTSDPTAVVFKTIDYMNDSSSPYVVYFSSRGPNPITSDILKPDLTAPGVNILAAWSEGTSMSGLPGDKRVVPYNIISGTSMSCPHAT AAAAYVKSFHPDWSPAAVKSALMTTARPFDAKDNTDAEFAYGSGQINPARAADPGLVYDAGETDYVKLLCGQGYSTKQLRLVTGDQNACSAATNGTVWDL NYPSFALSSTSAGQSVSKAFHRTVTNFGTGNATYKAIVNAAAGLTLKVEPNVLSFKSVGEKQSFVLTVSAVVGNSTTSGSLVWSDGEHTVRSPVVAFVSS TE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59090		ATSBT4.12	subtilase 4.12 (.1.2.3)		Lus10040253 [exp]	0	1
AT4G31805			WRKY family transcription fact...		Lus10024451 [exp]	1.0	0.8974
					Lus10037345 [exp]	2.4	0.8438
AT1G25570			Di-glucose binding protein wit...		Lus10041488 [exp]	3.0	0.8395
AT4G27570			UDP-Glycosyltransferase superf...		Lus10001858 [exp]	3.7	0.8434
AT3G14130			Aldolase-type TIM barrel famil...		Lus10013173 [exp]	4.2	0.8728
AT1G33030			O-methyltransferase family pro...		Lus10014825 [exp]	6.3	0.8031
AT1G08080		ATACA7, ACA7	A. THALIANA ALPHA CARBONIC ANH...		Lus10023915 [exp]	6.5	0.8252
AT2G23770			protein kinase family protein ...		Lus10021889 [exp]	7.1	0.8559
AT4G31805			WRKY family transcription fact...		Lus10007445 [exp]	8.5	0.8460
AT1G72990		BGAL17	beta-galactosidase 17 (.1.2)		Lus10015616 [exp]	8.8	0.7784

Compare expression of checked genes

Lus10040253 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.