Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55640 330 / 3e-113 Mitochondrial substrate carrier family protein (.1) AT3G53940 308 / 3e-104 Mitochondrial substrate carrier family protein (.1) AT2G37890 276 / 5e-92 Mitochondrial substrate carrier family protein (.1) AT5G51050 120 / 5e-31 APC2 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) AT5G61810 100 / 2e-24 APC1 ATP/phosphate carrier 1, Mitochondrial substrate carrier family protein (.1.2) AT3G51870 99 / 1e-23 Mitochondrial substrate carrier family protein (.1) AT4G01100 99 / 1e-23 ADNT1 adenine nucleotide transporter 1 (.1.2) AT5G01500 96 / 2e-22 TAAC thylakoid ATP/ADP carrier (.1) AT4G32400 92 / 4e-21 EMB42, EMB104, ATBT1, SHS1 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) AT4G26180 89 / 3e-20 Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004689 [exp] 421 / 7e-149 AT3G55640 482 / 1e-172 Mitochondrial substrate carrier family protein (.1) Lus10021497 [exp] 289 / 1e-96 AT3G53940 496 / 2e-177 Mitochondrial substrate carrier family protein (.1) Lus10022597 [exp] 284 / 8e-95 AT3G53940 486 / 3e-173 Mitochondrial substrate carrier family protein (.1) Lus10024344 [exp] 217 / 2e-69 AT3G53940 417 / 4e-147 Mitochondrial substrate carrier family protein (.1) Lus10012658 [exp] 195 / 5e-61 AT3G53940 327 / 5e-112 Mitochondrial substrate carrier family protein (.1) Lus10043022 [exp] 105 / 1e-25 AT5G51050 758 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Lus10032522 [exp] 105 / 2e-25 AT5G51050 563 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Lus10027789 [exp] 99 / 8e-24 AT3G51870 462 / 8e-164 Mitochondrial substrate carrier family protein (.1) Lus10016736 [exp] 98 / 7e-23 AT5G51050 749 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G197400 [exp] 380 / 5e-133 AT3G55640 488 / 1e-174 Mitochondrial substrate carrier family protein (.1) Potri.008G060900 [exp] 373 / 3e-130 AT3G55640 489 / 2e-175 Mitochondrial substrate carrier family protein (.1) Potri.006G091900 [exp] 319 / 9e-109 AT3G53940 483 / 4e-172 Mitochondrial substrate carrier family protein (.1) Potri.016G103300 [exp] 312 / 6e-106 AT3G53940 513 / 0.0 Mitochondrial substrate carrier family protein (.1) Potri.015G108900 [exp] 112 / 5e-28 AT5G51050 725 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Potri.012G110700 [exp] 106 / 6e-26 AT5G51050 714 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Potri.016G115400 [exp] 99 / 2e-23 AT5G01500 517 / 0.0 thylakoid ATP/ADP carrier (.1) Potri.006G099800 [exp] 97 / 1e-22 AT5G01500 503 / 1e-178 thylakoid ATP/ADP carrier (.1) Potri.002G168100 [exp] 96 / 1e-22 AT4G01100 565 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.014G095400 [exp] 92 / 3e-21 AT4G01100 599 / 0.0 adenine nucleotide transporter 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [flax] [poplar] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Lus10040257 pacid=23174043 polypeptide=Lus10040257 locus=Lus10040257.g ID=Lus10040257.BGIv1.0 annot-version=v1.0 ATGCAGACTGATGCGAGAGTTGGAGTTGTGGTGGAAGGAGGCCCAAGAGTTTTGAATTCAAAAAAGCAGCAGCCTGTTCAGCAACATCACCATCAACAAT CGCAGATCGGAACTATTTCTCAGCTTGTCGCCGGTGGGGTAGCGGGCGCTCTTAGCAAGACATGCACAGCTCCTCTTGCCCGTCTCACCATTCTTTTCCA AATACAAGGGATGCACTCAAATACTGCATCTTTGAGGAAGGCAAGCATATGGAATGAGGCTTCCAGGATCGTTAGGGAGGAGGGAGTTAGAGCTTTTTGG AAAGGGAATCTTGTTACAATTGCTCATCGTTTACCTTATTCGTCTGTTAATTTCTATGCATATGAGCACTATAAAGAGTTGCTGCGTATGGTACCTGGAC TAGAGAGTCGCACGGATAGCATAGGTGGAGATGTCTTTGTTCATTTCTTAGGTGGTGGTATGGCTGGGGGTACAGCTTCCACAGCTTCTTATCCCCTATA CCTTGTAAGAACACGCCTCGCAGCCCCGGTGCTCTCAGCTTCTCAGTGTATGAAGGCTTACGATCTTTGTGGCAGTCTCATAGTTGCAGTGAGTTTGGCT TGTGGAAGTCTTTCTGGCATTGCATCCTCAACAGCAACGTTTCCTCTTGATCTGGTGAGACGGCGGAAGCAATTGGAAGGAGCAGGCGGGCGGGCCCGCG TTTACACAACAAGCCTTATCGGGACATTCAAGCAGATACTAAAGACGGAGGGATTCCGGGGACTTTACAGAGGCATTATGCCCGAGTACTACAAAGTTGT TCCTGGTGTCGGCATTTGCTTTATGACCTACGAGACACTGAAAGTGCTTCTAGCTGATCTCAACTCGACAGCATAA
AA sequence Show only first row Show all	>Lus10040257 pacid=23174043 polypeptide=Lus10040257 locus=Lus10040257.g ID=Lus10040257.BGIv1.0 annot-version=v1.0 MQTDARVGVVVEGGPRVLNSKKQQPVQQHHHQQSQIGTISQLVAGGVAGALSKTCTAPLARLTILFQIQGMHSNTASLRKASIWNEASRIVREEGVRAFW KGNLVTIAHRLPYSSVNFYAYEHYKELLRMVPGLESRTDSIGGDVFVHFLGGGMAGGTASTASYPLYLVRTRLAAPVLSASQCMKAYDLCGSLIVAVSLA CGSLSGIASSTATFPLDLVRRRKQLEGAGGRARVYTTSLIGTFKQILKTEGFRGLYRGIMPEYYKVVPGVGICFMTYETLKVLLADLNSTA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55640			Mitochondrial substrate carrie...		Lus10040257 [exp]	0	1
AT3G55640			Mitochondrial substrate carrie...		Lus10004689 [exp]	1.4	0.8684
AT1G20270			2-oxoglutarate (2OG) and Fe(II...		Lus10017249 [exp]	4.9	0.8765
AT5G09630			LisH/CRA/RING-U-box domains-co...		Lus10007106 [exp]	5.2	0.8376
AT2G29950		ELF4-L1	ELF4-like 1 (.1)		Lus10018237 [exp]	12.2	0.7883
AT2G41640			Glycosyltransferase family 61 ...		Lus10035441 [exp]	15.7	0.8179
AT1G20270			2-oxoglutarate (2OG) and Fe(II...		Lus10005620 [exp]	17.3	0.7965
AT2G30970		ASP1	aspartate aminotransferase 1 (...		Lus10025252 [exp]	23.4	0.8130
AT3G53220			Thioredoxin superfamily protei...		Lus10026540 [exp]	23.5	0.7681
AT4G15800		RALFL33	ralf-like 33 (.1)		Lus10037512 [exp]	30.3	0.7445
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Lus10041646 [exp]	32.6	0.8107

Compare expression of checked genes

Lus10040257 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.