Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39830 633 / 0 LRD3, DAR2 LATERAL ROOT DEVELOPMENT 3, DA1-related protein 2 (.1) AT4G36860 518 / 4e-177 DAR1 DA1-RELATED PROTEIN 1, LIM domain-containing protein (.1) AT1G19270 488 / 2e-165 DA1 DA1 (.1) AT5G66610 338 / 4e-107 DAR7 DA1-related protein 7 (.1.2) AT5G66620 335 / 3e-105 DAR6 DA1-related protein 6 (.1) AT5G17890 320 / 1e-93 CHS3, DAR4 CHILLING SENSITIVE 3, DA1-related protein 4 (.1) AT5G66640 290 / 4e-90 DAR3 DA1-related protein 3 (.1.2) AT5G66630 296 / 9e-90 DAR5 DA1-related protein 5 (.1) AT2G42710 224 / 1e-65 Ribosomal protein L1p/L10e family (.1) AT3G63490 71 / 5e-13 EMB3126 EMBRYO DEFECTIVE 3126, Ribosomal protein L1p/L10e family (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004690 [exp] 646 / 0 AT2G39830 560 / 0.0 LATERAL ROOT DEVELOPMENT 3, DA1-related protein 2 (.1) Lus10022486 [exp] 518 / 1e-177 AT4G36860 679 / 0.0 DA1-RELATED PROTEIN 1, LIM domain-containing protein (.1) Lus10016791 [exp] 515 / 5e-176 AT4G36860 669 / 0.0 DA1-RELATED PROTEIN 1, LIM domain-containing protein (.1) Lus10010033 [exp] 478 / 1e-162 AT1G19270 657 / 0.0 DA1 (.1) Lus10016298 [exp] 474 / 7e-161 AT1G19270 646 / 0.0 DA1 (.1) Lus10032736 [exp] 468 / 2e-158 AT1G19270 628 / 0.0 DA1 (.1) Lus10018789 [exp] 422 / 1e-140 AT1G19270 575 / 0.0 DA1 (.1) Lus10036988 [exp] 341 / 3e-110 AT2G42710 398 / 4e-137 Ribosomal protein L1p/L10e family (.1) Lus10015809 [exp] 186 / 9e-55 AT2G42710 227 / 2e-73 Ribosomal protein L1p/L10e family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G197500 [exp] 655 / 0 AT2G39830 688 / 0.0 LATERAL ROOT DEVELOPMENT 3, DA1-related protein 2 (.1) Potri.005G128900 [exp] 524 / 5e-180 AT4G36860 696 / 0.0 DA1-RELATED PROTEIN 1, LIM domain-containing protein (.1) Potri.014G039900 [exp] 506 / 3e-173 AT1G19270 654 / 0.0 DA1 (.1) Potri.002G132700 [exp] 505 / 4e-173 AT1G19270 669 / 0.0 DA1 (.1) Potri.007G032500 [exp] 502 / 4e-171 AT4G36860 675 / 0.0 DA1-RELATED PROTEIN 1, LIM domain-containing protein (.1) Potri.005G128800 [exp] 498 / 8e-170 AT4G36860 662 / 0.0 DA1-RELATED PROTEIN 1, LIM domain-containing protein (.1) Potri.014G143000 [exp] 219 / 2e-64 AT2G42710 367 / 4e-125 Ribosomal protein L1p/L10e family (.1) Potri.T124504 [exp] 165 / 2e-45 AT1G19270 182 / 3e-53 DA1 (.1) Potri.009G111446 [exp] 85 / 1e-19 AT2G39830 92 / 7e-23 LATERAL ROOT DEVELOPMENT 3, DA1-related protein 2 (.1) Potri.001G262400 [exp] 75 / 4e-14 AT3G63490 427 / 2e-150 EMBRYO DEFECTIVE 3126, Ribosomal protein L1p/L10e family (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [flax] [poplar] Peptidase_MA PF12315 [flax] [poplar] DA1-like Protein DA1 CL0167 [flax] [poplar] Zn_Beta_Ribbon PF00412 [flax] [poplar] LIM LIM domain CL0167 [flax] [poplar] PF00687 [flax] [poplar] Ribosomal_L1 Ribosomal protein L1p/L10e family
Representative CDS sequence Show only first row Show all	>Lus10040258 pacid=23173916 polypeptide=Lus10040258 locus=Lus10040258.g ID=Lus10040258.BGIv1.0 annot-version=v1.0 ATGCCAGTTTCCTACGCACTGATGACGAATGCTCAGCCTCCTCCGCAGAAGCAGTTCTCGAGACAGCCGCGGGAAGTCCAGAATTCGTCGGAGGCTCGGA CGAATTGGAGTCGGGAGGACGCCAGGTATGTGAAAGACGCGCCGTCCGTTGTACCGGTTTCGTACGCGCCTCCTGTGGCGCCCTTGCTGGAGGACAAGGT TGAAGCGGAAGCGAGTGAAAAGGACGGCGAGGATGTGAAGACTGAGGATCACCGGGTTGAAACGGAGAATAGGGCGATGAGGAGGATTTTGAGGATGGAG GAAGAGAAAGAGCAGGCGGATGTGCCTTTCCCTAGATTGATCGTACCGGAGAAGAAGAAAGAGACGAGTCCGCTTCTGGAATTGATGGAGCCATTCGCCA AATCAAGACTAGGCAACGCCAGGACGACGTTTGATGAAACTATTGAAGCACATGCGAGACTGGGAATCGATAAATCTCGATCAGACCTGGTTCTGAAAGT AGTATTCTTTGCTGAAGGAGCAGAGGCAGAAGCTAGAACTGCAGGTGCCGACATTGTTGGAGGCATCCAACTTATTTTATTATTTTATTTGATTCTTGAA GCAAAGGCAGAAGAAGATAGAGCACTTCCATTGTTTTTATTTGATTGTTTTATGATCAAAGGTACCGGCAAGGTGGACTTCGACAAATGTTACGCAACTC GTCAGTTGTATCCCCGGGTTGCCAAGATTGCAAGGATTCTTAACCGCCATGGCTTGATGCCTGATGCAAAGCGATGGGCAGTAAAAGCAGCAAAGCAGAA TCAGATCAAGTTTAGAATGGACAAGTCATCCATCGTTCATGCGGGACTTGGAAAGGCAAGTTTCAGCGAAGAGTCCCTACGGGAGAACATCGGTGCTTTT ATGAACGCCCTTCTGCAAGCAAAGCCTGCTGGCTTGAAGAAAATGGATGATGCTGATGTTCTGAACTGGTTTCGAAAAGCAGGAAGGTACGGATGGCACC CTACCACGAATAACGACGAAGCAGCATTAGCTAGAGCTCAGCAAGAGAACCTTAACTTATCTTCTTACCCTCCTCCTTATGCGATCCCTCCTCCCCCGCA TTACTTCCCAAGAGGGTATAGGTTATGTGGCGGCTGCCATCGTGAGATTGGATATGGGAACTATCTGGGATGTATGGGGATGTTCTTCCATCCAGAATGC TTCAGATGTCATGCTTGTGCCTACCCAATTACTGAAACTGAGTTTTCTTTGTCAGGGAAAGACCCATACCACAAGTCATGTTTCAAAGAGCTTACCCATC CCAAATGTGAAGTCTGCCTCCAATTTATTCCAACAAACTCAGCCGGTTTGATCGAGTATAGATGCCACCCATTCTGGTCACAGAAGTACTGTCCATGTCA CGAGCACGACGGGACAGCTAGATGCTGCAGTTGTGAGAGACTGGAGTCTTGGAATGCAAGATACTATACCTTGGAGGATGGGAGGAGCCTATGCTTGGAA TGCATGGAATCAGCCATAATGGACACCGGCGATTGCCAACCGCTTTACCACGCCATACGAGACTACTACGAAGGAATGATCATGAGATTGGATCAACAGA TTCCCATGCTGCTGGTTGAAAGACAAGCACTTAATGAAGCCATCATCGGGGAGAAGCACGGATACCATCACATGCCTGAGACGAGAGGACTATGCCTTTC CGAAGAGCAGACCGTCACTAGTGTACAAAGGAGGCCGAGGATCGGAGGGCACCGGCTTGTCGGAATGAGAACGCAGCCTCAGAAGCTTATCAGAAGATGT GAAGTCACAGCAATTCTCGTCCTCTATGGCTTACCAAGGCTATTAACCGGGGCCATTCTCGCTCACGAACTGATGCACGGATGGCTACGCCTGAAAGGAT ACCGGAATCTAAATCCAGAGGTGGAGGAAGGAATCTGCCAAGTGCTATCCTACATGTGGCTCGAATCCGAAGTACTGCCCGGATCCAGAAGTAATAATAT GGCATCGACATCAGCGGCATCTTCTTCTTCCTGTTCTTCCTACTCCTCGTCCAAGAAAGGCGGGAGATCCGAGGTCGAAAACAAACTCGGAGAGTTCTTC ATGCATCAAATAGCTCACGACGCTTCTCCGGCATACGGAGGAGGATTCAGGGCTGCTAACAAGGCAGTCAACAAGTACGGCCTCCGTCGGACTCTGGATC ACATACGCCTCACTGGGAATTTCCCACTGTAA
AA sequence Show only first row Show all	>Lus10040258 pacid=23173916 polypeptide=Lus10040258 locus=Lus10040258.g ID=Lus10040258.BGIv1.0 annot-version=v1.0 MPVSYALMTNAQPPPQKQFSRQPREVQNSSEARTNWSREDARYVKDAPSVVPVSYAPPVAPLLEDKVEAEASEKDGEDVKTEDHRVETENRAMRRILRME EEKEQADVPFPRLIVPEKKKETSPLLELMEPFAKSRLGNARTTFDETIEAHARLGIDKSRSDLVLKVVFFAEGAEAEARTAGADIVGGIQLILLFYLILE AKAEEDRALPLFLFDCFMIKGTGKVDFDKCYATRQLYPRVAKIARILNRHGLMPDAKRWAVKAAKQNQIKFRMDKSSIVHAGLGKASFSEESLRENIGAF MNALLQAKPAGLKKMDDADVLNWFRKAGRYGWHPTTNNDEAALARAQQENLNLSSYPPPYAIPPPPHYFPRGYRLCGGCHREIGYGNYLGCMGMFFHPEC FRCHACAYPITETEFSLSGKDPYHKSCFKELTHPKCEVCLQFIPTNSAGLIEYRCHPFWSQKYCPCHEHDGTARCCSCERLESWNARYYTLEDGRSLCLE CMESAIMDTGDCQPLYHAIRDYYEGMIMRLDQQIPMLLVERQALNEAIIGEKHGYHHMPETRGLCLSEEQTVTSVQRRPRIGGHRLVGMRTQPQKLIRRC EVTAILVLYGLPRLLTGAILAHELMHGWLRLKGYRNLNPEVEEGICQVLSYMWLESEVLPGSRSNNMASTSAASSSSCSSYSSSKKGGRSEVENKLGEFF MHQIAHDASPAYGGGFRAANKAVNKYGLRRTLDHIRLTGNFPL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39830		LRD3, DAR2	LATERAL ROOT DEVELOPMENT 3, DA...		Lus10040258 [exp]	0	1
AT3G07420		ATNS2, SYNC2_AR...	SYNTHETASE C2, asparaginyl-tRN...		Lus10025874 [exp]	3.9	0.9218
AT1G29380			Carbohydrate-binding X8 domain...		Lus10004546 [exp]	7.7	0.9111
AT1G29380			Carbohydrate-binding X8 domain...		Lus10004600 [exp]	11.9	0.9090
					Lus10042826 [exp]	12.7	0.8728
AT2G03500	GARP		Homeodomain-like superfamily p...		Lus10043304 [exp]	13.0	0.8913
AT5G50290			unknown protein		Lus10042105 [exp]	14.1	0.8824
AT5G22870			Late embryogenesis abundant (L...		Lus10021404 [exp]	14.7	0.8902
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Lus10035628 [exp]	20.4	0.8618
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Lus10026009 [exp]	21.5	0.8736
AT4G36710	GRAS	AtHAM4	Arabidopsis thaliana HAIRY MER...		Lus10024029 [exp]	22.0	0.8536

Compare expression of checked genes

Lus10040258 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.