Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05970 728 / 0 NEDD1 NEURAL PRECURSOR CELL EXPRESSED, DEVELOPMENTALLY DOWN-REGULATED GENE 1, Transducin/WD40 repeat-like superfamily protein (.1.2) AT3G49660 68 / 4e-12 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT5G52820 65 / 1e-10 WD-40 repeat family protein / notchless protein, putative (.1) AT1G62020 62 / 9e-10 Coatomer, alpha subunit (.1) AT5G08390 61 / 3e-09 Transducin/WD40 repeat-like superfamily protein (.1) AT2G21390 60 / 7e-09 Coatomer, alpha subunit (.1) AT1G11160 59 / 1e-08 Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 57 / 2e-08 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT5G23430 58 / 3e-08 Transducin/WD40 repeat-like superfamily protein (.1.2) AT2G43770 55 / 1e-07 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004693 [exp] 1169 / 0 AT5G05970 714 / 0.0 NEURAL PRECURSOR CELL EXPRESSED, DEVELOPMENTALLY DOWN-REGULATED GENE 1, Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10001024 [exp] 982 / 0 AT5G05970 843 / 0.0 NEURAL PRECURSOR CELL EXPRESSED, DEVELOPMENTALLY DOWN-REGULATED GENE 1, Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10030162 [exp] 971 / 0 AT5G05970 846 / 0.0 NEURAL PRECURSOR CELL EXPRESSED, DEVELOPMENTALLY DOWN-REGULATED GENE 1, Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10014674 [exp] 67 / 1e-11 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 66 / 2e-11 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10039636 [exp] 60 / 3e-09 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10037538 [exp] 57 / 4e-08 AT2G21390 1402 / 0.0 Coatomer, alpha subunit (.1) Lus10041007 [exp] 56 / 7e-08 AT5G23430 721 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10024447 [exp] 56 / 1e-07 AT5G25150 1006 / 0.0 TBP-associated factor 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G060700 [exp] 882 / 0 AT5G05970 862 / 0.0 NEURAL PRECURSOR CELL EXPRESSED, DEVELOPMENTALLY DOWN-REGULATED GENE 1, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.010G197700 [exp] 880 / 0 AT5G05970 826 / 0.0 NEURAL PRECURSOR CELL EXPRESSED, DEVELOPMENTALLY DOWN-REGULATED GENE 1, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.002G051900 [exp] 62 / 3e-10 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.018G020200 [exp] 61 / 2e-09 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1) Potri.005G148500 [exp] 60 / 2e-09 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G255400 [exp] 58 / 2e-08 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G263400 [exp] 57 / 4e-08 AT5G25150 1018 / 0.0 TBP-associated factor 5 (.1) Potri.015G069700 [exp] 57 / 4e-08 AT1G62020 2100 / 0.0 Coatomer, alpha subunit (.1) Potri.012G074800 [exp] 57 / 5e-08 AT1G62020 2113 / 0.0 Coatomer, alpha subunit (.1) Potri.008G002300 [exp] 56 / 1e-07 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10040260 pacid=23174191 polypeptide=Lus10040260 locus=Lus10040260.g ID=Lus10040260.BGIv1.0 annot-version=v1.0 ATGATGAAGTTTGAGAATCACTCAACGGCGCTACTCGCCGCAAGTGGAGGCGACACCGTCAAGCTATTCGACGTTTCAGTGAATTCAGGAGAACCCTGCA CCTTTACTTACACGCCCTCACCGAGTTTCCTTGTCAACTCGGTCAAGTGGAACCACACTAATTTAGTTGTGGCAAGTGCTGGAGAGGACAAGAAGATATC GCTATGGAGAAGAAATGGTCAGAGCTTGGGCACCATTCCTCTCTTTGGTTCAGATAGTGGAGGCACTGAGGAATCCATATCGGCTATTAACTTTAGTAAT AAAGGATCTAGATATATATGCTCTGGTGGAAGTGGTAGAGTTGTAAGAATATGGGATTTACAAAGGAAACTCTGCATAAAACGGTTGATGGGTCATACAA GCACAATAACAGGTACTATGTACAACTGCAAGGATGAGCACTTGGCTTCAGTCAGTACAAGTGGGGATCTTATTGTTCACAACCTTGCTTCTGGTGGAAA AGCAGCAGAACTAAAGGACCCCTACAACCAGGTACTTAGGGTGCTTGATTATTCACGCATTGGCCGTCACCTCTTGGTCACTGCAGGTGATGATGGATCA GTACATTTATGGGACACTACTGGTCGCCATCCAAAGAATTCTTGGTTGAAGCAACACTCTGCACCAATAGGTGGCGTTAGCTTCTCTCCATCAAGCGACA AGGTTATAGCAAGTGTTGGCCTGGACAAAAAATTATATACTTATGATTCTGGGTCCAGGCGATTCTCGTCTGTTATTTCTTGTGAGGAACCTTTCTCATC ATTGGCATATCGCGATGATGGATTGGTTCTTGCAGCTGGAACCAGTTCTGGCAGGGTGGTCTTTTACGATGTCCGTGGAAAACCACAGCCTTACACAGTT CTTCGTGCTTATAGCAGCTCACAGGCTGTTACAAGTTTATGCTGGCAGAGATCAAAACCAGTCGCTGTAAATGAGAACTGTACTGCTGAGATTGCTCTTC TCGGCGGATCTGTTAAAGATTCTATTCTTATGCCTGACCCACTTCCCTCCGTGACATCTTCGAGCTTTTCACTACCCACAGCAATATCTGGGCCAACCTT GCCAACTGTCACTTTTGGCGAAGAAACGCCACTTCGGCGGCCAGGCGGAGCGTTAACGAGATTGAGGGCTCCGCATGCTGGCTATAATTTTGAGGATGAC ATGGGGGTATTCTCCCCACTTGTGGAAGTTCAGCCTATCACCCCTTCCCTTGATAAGCTATGGGATTTTCACGACGGTTCTAAGATAGAGAATCTATCAG ATGATAAGAAGCCTTCATCCTTCGTGTTTCCGTCGTCAAACAGGAGATTCCCTTTCGCTGAAGACGGAATCAATGAGTATTCAATACCCAGCTCAACTTC TAGACAGGATGACACCCGATCTTCAAGAAGTGCGGACACCTCAATAATGCCTCCAGAAGCTTGGGGCGGTGAAAGGTTGGATACAATTGCACACCTTCGC CAGGCGTCCAACTTTCCACACCGTCTTGTGATGTCAACTTCCGGAAGTTTCACTTCAGGGTCTATGCTTCAAACAAGTATGAGTCCGTTAACTACAAGTT TCTCAAATGCGGGAGCCAGAGACGTCTCTTCTGGTCAGGACTCTCCAATTGCGGGAGTGGCTAGCACCGAAGCATCGTCAGGGCTGGCATCATCATCACC AACTTTCGCCCTTAGATATTCAACCTACGCAGAAAGAATTGGCACATCACATTTCAGTGATGGGGCATCATCTCTTGGTGTTGCTTCGCCCAAAGTGAAG AAGACAGGATCTGAAACCAAGGAAGAACTCTTGAACAGCCTCTTGACGAGGTCTGACAGTTTGGCTGCCGCTGAACCGGGAGTTCTTCCGGTTGCAAATG GAGTGATAGCGCAACCGCGGCACAAGGTTGTGCAGCCAGATATAATACAGCCGCAACAAGGGGGTTCCTCTTCCTTCCCTCTCCAGATATTTCAACATAC CCTGGAACAAACTCTGGGTTCTTTCCGGGACTCGATACGCGAAGATATGAGGAACCTTCACATTGAAGTCCTGAGACAATTTCATATGCAGGAGAGCATG TATCTGGAGAACCAAGCAGAGATGATGAAGAAAATCGAGTCCCTCGAGAAGCAAAACCGGGAGCTTAGACAATTAAGACGATAG
AA sequence Show only first row Show all	>Lus10040260 pacid=23174191 polypeptide=Lus10040260 locus=Lus10040260.g ID=Lus10040260.BGIv1.0 annot-version=v1.0 MMKFENHSTALLAASGGDTVKLFDVSVNSGEPCTFTYTPSPSFLVNSVKWNHTNLVVASAGEDKKISLWRRNGQSLGTIPLFGSDSGGTEESISAINFSN KGSRYICSGGSGRVVRIWDLQRKLCIKRLMGHTSTITGTMYNCKDEHLASVSTSGDLIVHNLASGGKAAELKDPYNQVLRVLDYSRIGRHLLVTAGDDGS VHLWDTTGRHPKNSWLKQHSAPIGGVSFSPSSDKVIASVGLDKKLYTYDSGSRRFSSVISCEEPFSSLAYRDDGLVLAAGTSSGRVVFYDVRGKPQPYTV LRAYSSSQAVTSLCWQRSKPVAVNENCTAEIALLGGSVKDSILMPDPLPSVTSSSFSLPTAISGPTLPTVTFGEETPLRRPGGALTRLRAPHAGYNFEDD MGVFSPLVEVQPITPSLDKLWDFHDGSKIENLSDDKKPSSFVFPSSNRRFPFAEDGINEYSIPSSTSRQDDTRSSRSADTSIMPPEAWGGERLDTIAHLR QASNFPHRLVMSTSGSFTSGSMLQTSMSPLTTSFSNAGARDVSSGQDSPIAGVASTEASSGLASSSPTFALRYSTYAERIGTSHFSDGASSLGVASPKVK KTGSETKEELLNSLLTRSDSLAAAEPGVLPVANGVIAQPRHKVVQPDIIQPQQGGSSSFPLQIFQHTLEQTLGSFRDSIREDMRNLHIEVLRQFHMQESM YLENQAEMMKKIESLEKQNRELRQLRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05970		NEDD1	NEURAL PRECURSOR CELL EXPRESSE...		Lus10040260 [exp]	0	1
AT5G67265			unknown protein		Lus10042633 [exp]	1.0	0.9213
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10025409 [exp]	3.5	0.9203
AT3G19184	B3		AP2/B3-like transcriptional fa...		Lus10014586 [exp]	3.9	0.8431
AT3G27890		NQR	NADPH:quinone oxidoreductase (...		Lus10026172 [exp]	3.9	0.8955
AT4G09890			Protein of unknown function (D...		Lus10033529 [exp]	4.5	0.8872
AT2G22300	CAMTA	SR1, CAMTA3	CALMODULIN-BINDING TRANSCRIPTI...		Lus10024044 [exp]	4.6	0.8755
AT1G80930			MIF4G domain-containing protei...		Lus10002210 [exp]	5.5	0.8830
					Lus10004450 [exp]	6.0	0.8945
					Lus10039418 [exp]	11.1	0.8122
AT5G02640			unknown protein		Lus10038485 [exp]	13.6	0.8654

Compare expression of checked genes

Lus10040260 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.