Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05980 639 / 0 ATDFB, FPGS1 folylpolyglutamate synthetase 1, DHFS-FPGS homolog B (.1.2) AT3G55630 524 / 0 ATDFD, FPGS3 folylpolyglutamate synthetase 3, DHFS-FPGS homolog D (.1.2.3) AT3G10160 493 / 2e-169 ATDFC, FPGS2 folylpolyglutamate synthetase 2, A. THALIANA DHFS-FPGS HOMOLOG C, DHFS-FPGS homolog C (.1) AT5G41480 85 / 3e-17 EMB9, ATDFA, GLA1 GLOBULAR ARREST1, EMBRYO DEFECTIVE 9, A. THALIANA DHFS-FPGS HOMOLOG A, Folylpolyglutamate synthetase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004694 [exp] 918 / 0 AT5G05980 694 / 0.0 folylpolyglutamate synthetase 1, DHFS-FPGS homolog B (.1.2) Lus10030161 [exp] 747 / 0 AT5G05980 696 / 0.0 folylpolyglutamate synthetase 1, DHFS-FPGS homolog B (.1.2) Lus10001023 [exp] 648 / 0 AT5G05980 599 / 0.0 folylpolyglutamate synthetase 1, DHFS-FPGS homolog B (.1.2) Lus10038824 [exp] 83 / 2e-16 AT5G41480 553 / 0.0 GLOBULAR ARREST1, EMBRYO DEFECTIVE 9, A. THALIANA DHFS-FPGS HOMOLOG A, Folylpolyglutamate synthetase family protein (.1) Lus10014939 [exp] 77 / 1e-14 AT5G41480 558 / 0.0 GLOBULAR ARREST1, EMBRYO DEFECTIVE 9, A. THALIANA DHFS-FPGS HOMOLOG A, Folylpolyglutamate synthetase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G060600 [exp] 694 / 0 AT5G05980 724 / 0.0 folylpolyglutamate synthetase 1, DHFS-FPGS homolog B (.1.2) Potri.010G197800 [exp] 676 / 0 AT5G05980 686 / 0.0 folylpolyglutamate synthetase 1, DHFS-FPGS homolog B (.1.2) Potri.006G045400 [exp] 499 / 6e-171 AT3G10160 705 / 0.0 folylpolyglutamate synthetase 2, A. THALIANA DHFS-FPGS HOMOLOG C, DHFS-FPGS homolog C (.1) Potri.016G041800 [exp] 498 / 7e-171 AT3G10160 708 / 0.0 folylpolyglutamate synthetase 2, A. THALIANA DHFS-FPGS HOMOLOG C, DHFS-FPGS homolog C (.1) Potri.015G022400 [exp] 79 / 3e-15 AT5G41480 570 / 0.0 GLOBULAR ARREST1, EMBRYO DEFECTIVE 9, A. THALIANA DHFS-FPGS HOMOLOG A, Folylpolyglutamate synthetase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08245 [flax] [poplar] Mur_ligase_M Mur ligase middle domain
Representative CDS sequence Show only first row Show all	>Lus10040261 pacid=23174082 polypeptide=Lus10040261 locus=Lus10040261.g ID=Lus10040261.BGIv1.0 annot-version=v1.0 ATGTCGGGCGCTGATGTTGAGCTTCGTGCTCGTGATCCCGCAGGCGACGATGAAACTGCGCGTGCTCTCACGCCGTACAACGAGGCGATGGACGCTTTGT CTTCTTTGATAACGAAGCGGAGTCGTGCTGATAAGAGCAACAAAGGAGATCAATTCGATCTACTCTTTGATTATCTGAAGATGCTGGAGCTGGAGGATGC ATTGGCAGATATGAAGATCGTTCACGTGGCAGGTACTAAAGGCAAGGGATCCACATGCACCTTCACGGAGTCTATACTCCGGAATTGTGGCTTTCGAACT GGGCTTTTCACATCTCCTCACCTCATTGACATCCGAGAAAGGTTTCGATTAGATGGCGTTGATATCTCCGAGGAGAAGTTCTTGGCTTATTTCTGGTGGT GTTTCAACCGATTAAAGGAAATGACAACAGAAGATGTACCAATGCCTCCTTTGTTTCGTTTTCTTGCATTACTTGCCTTCAAGATCTTTGCAGCAGAGCA GGTAGAAGTTGCCGTTTTAGAGGTTGGATTGGGAGGCAAGTTTGACGCAACAAATGTGGTTCAGAAACCTGTTGTATGTGGCATAACTTCCCTTGGGTAC GACCATACGGAGATTCTTGGGAACACCCTTGGAGAAATTGCTGGTGAAAAAGCTGGTATTTTGAAGCTTGGTGTTCCTGCATTTACTGTGCAGCAACCTG AGGAAGCCATGCGTGTCCTTGAAGAAAAAGCTTCCAGTTTACATGTAGATCTTCAAATTGTGCAACCGTTGGACGTCAATTTGCTAACTGGCCTAAAACT TGGACTTGACGGGGACCACCAATATGTCAATGCTGGTCTTGCCACTGCACTTTCTTTCAGCTGGCTAAAGAGTACAGGCCATCTGGAACTTGCGAGCCAG GAACACGCTGGATCGCTACCGGAGCCTTTTGTTAAGGGGTTAACAACAGCTAGGTTTCAAGGCCGGGCTCAAATTGTCCCTGACGAATATGTAGACAGTG AGAGTGACGGGGATCTAGTCTTTTATTTGGATGGCGCCCACAGCCCTGAAAGCATGGAAATATGTGCAAAATGGTTTTCTGGTGCTGTCAAAGGCGAAAA CCAGCATGATACAGTGACATCGCCAGAGAGTTCCTCCAAGCATCAATTGGAGAAGAATATAGTACAGATACTCTTATTCAATTGCATGACGGTGCGTGAT CCTCAGCTGCTTCTTCCACCGTTAATAAAGACGTGTGCCAGTCAAGGTGTTAACTTCAAGAAGGCACTCTTTGTACCCAATACCTCGGTGTATCATAAGG TCGGATCTCATGCTTCACTATCAACTGATCCTGAAGTTGACTTGTCATGGCAGTTTACTCTTCAAAGAGTGTGGGAAACCATCGTCCAGAATGATAAAGG AAGCGACGCAAGAGATGTGGAACCTGTCTCAGAGGAAAATGGCGATTCTGAAACAAATGCTGAGAGTTGTGAGAGCAGTGAAGTCTTTCCTTCTCTCCCT TTGACCATCAAATGGCTTAGGGACAGTGTCCGGCAGAATCCATCTGTCCTTGTTACCGGTTCGCTACATTTGGTGGGTGATGTGTTGAGACTGATAAGGA AGTAG
AA sequence Show only first row Show all	>Lus10040261 pacid=23174082 polypeptide=Lus10040261 locus=Lus10040261.g ID=Lus10040261.BGIv1.0 annot-version=v1.0 MSGADVELRARDPAGDDETARALTPYNEAMDALSSLITKRSRADKSNKGDQFDLLFDYLKMLELEDALADMKIVHVAGTKGKGSTCTFTESILRNCGFRT GLFTSPHLIDIRERFRLDGVDISEEKFLAYFWWCFNRLKEMTTEDVPMPPLFRFLALLAFKIFAAEQVEVAVLEVGLGGKFDATNVVQKPVVCGITSLGY DHTEILGNTLGEIAGEKAGILKLGVPAFTVQQPEEAMRVLEEKASSLHVDLQIVQPLDVNLLTGLKLGLDGDHQYVNAGLATALSFSWLKSTGHLELASQ EHAGSLPEPFVKGLTTARFQGRAQIVPDEYVDSESDGDLVFYLDGAHSPESMEICAKWFSGAVKGENQHDTVTSPESSSKHQLEKNIVQILLFNCMTVRD PQLLLPPLIKTCASQGVNFKKALFVPNTSVYHKVGSHASLSTDPEVDLSWQFTLQRVWETIVQNDKGSDARDVEPVSEENGDSETNAESCESSEVFPSLP LTIKWLRDSVRQNPSVLVTGSLHLVGDVLRLIRK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05980		ATDFB, FPGS1	folylpolyglutamate synthetase ...		Lus10040261 [exp]	0	1
AT1G73390			Endosomal targeting BRO1-like ...		Lus10031881 [exp]	6.5	0.7676
AT4G19670			RING/U-box superfamily protein...		Lus10018293 [exp]	7.1	0.7950
AT1G51590		MNS1, MANIB	ALPHA-MANNOSIDASE IB, alpha-ma...		Lus10034820 [exp]	10.3	0.7838
AT3G16090		AtHrd1A	homolog of yeast Hrd1, RING/U-...		Lus10023477 [exp]	10.5	0.7797
AT3G54850		ATPUB14	plant U-box 14 (.1)		Lus10038699 [exp]	15.5	0.7753
AT2G38250	Trihelix		Homeodomain-like superfamily p...		Lus10002481 [exp]	16.3	0.7500
AT4G01810			Sec23/Sec24 protein transport ...		Lus10010078 [exp]	19.7	0.7155
AT5G13560			unknown protein		Lus10023462 [exp]	21.4	0.7634
AT2G39805			Integral membrane Yip1 family ...		Lus10030159 [exp]	21.8	0.7301
AT2G16920		UBC23 ,PFU2	PHO2 FAMILY UBIQUITIN CONJUGAT...		Lus10025070 [exp]	22.0	0.7722

Compare expression of checked genes

Lus10040261 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.