Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39800 426 / 5e-144 ATP5CS, P5CS1 delta1-pyrroline-5-carboxylate synthase 1 (.1.2.3.4) AT3G55610 423 / 6e-144 P5CS2 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004696 [exp] 710 / 0 AT3G55610 492 / 3e-170 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2) Lus10001019 [exp] 496 / 5e-176 AT3G55610 519 / 0.0 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2) Lus10040263 [exp] 499 / 2e-174 AT3G55610 481 / 1e-162 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2) Lus10030158 [exp] 500 / 1e-172 AT3G55610 1089 / 0.0 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G198400 [exp] 470 / 8e-161 AT2G39800 1054 / 0.0 delta1-pyrroline-5-carboxylate synthase 1 (.1.2.3.4) Potri.008G060200 [exp] 442 / 4e-150 AT2G39800 1009 / 0.0 delta1-pyrroline-5-carboxylate synthase 1 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00696 [flax] [poplar] AA_kinase Amino acid kinase family
Representative CDS sequence Show only first row Show all	>Lus10040262 pacid=23173941 polypeptide=Lus10040262 locus=Lus10040262.g ID=Lus10040262.BGIv1.0 annot-version=v1.0 ATGAACGGCTACGCCCCTGAAAGCTCCAGAGCTTTCGTCAAGGACGTCAAGCGTATTGTCATCAAGGTTGGGACTGCTGTTGTCACTAGAGGCGATGGGA GATTGGCGCTTGGGAGATTGGGAGCTCTCTGTGAGCAGATTAAAGAGCTGAATTACCAGCATTTTGAAGTGATTATGGTTACGTCTGGTGCTGTTGGCCT CGGCCGCCAAAGGCTCAGATACCGCAAGTTAGTCAACAGCAGCTTTGCTGATCTCCAGAAGCCACCGGGTGATCTGGACGGGAAGGGGTGTGCTGCTGTT GGACAGAACAGTATCATGGCCCTTTATGACACCTTGTTCAGTCAGCTGGATGTGACTTCTGCTCAGATTCTCGTGACTGATAATGATTTTAGGGATAAAG ATCTCAGGACTCAACTTCAGCAGACTGTTGACTCGCTGCTCAACCTCAGGGTTGTCCCCATTTTCAACGAGAATGATGCAGATTCCTCTGGCATCTTCTG GGACAATGACAGCTTGGCTGCCTTGCTTGCATTGGAGTTGAACGCTGATCTTCTTGTTCTGCTGAGTGACGTGGACGGTCTTTACAGCGGTCCACCAAGT GATCCAAAGTCAAAGTTGATTCATACATACATTAAGGAAGTGCATCAAGGTGGAATCACGTTTGGGGACAAATCCAGGGTGGGAAGAGGCGGAATGACAG CAAAAGTTAAAGCTGCTGTCAATGCTGCTAATGCAGGTGTTCCTGTTATCATAACCAGCGGATTTGCTCTCCAGAACATAATTAAAGTCCTCCATGGAGA TGATATTGGCACTCTGTTTCACCGGGATGCTCACTCATGGGTCAGAACCAAAGAAACGGGAGCCCGTGACATGGCTGTTGCAGCAAGGGAGTGTTCTAGA CGTCTGCAGGCACTATCCTCAGAAGAGAGGAACAAGATATTGCTGGATATAGCAGATGCCCTCGAAGCCAATGAAAAAGTAATTAAGGTTGAGAATGATG CAGACCTTGCTGCTGCTGAGCAGGAAGGACTAGAAAGCTCCTTGTTAGCACGGTTGGCACTGAAGCCCGGGAAGGCAAGATACCCTTGTGCTGTTGCTCT GTTACCAATTTATGTCTTTATTTCTTGTGACTCTCCGGACAGTGTAACTGCTTTCTGGCTTTATGACGCAACAGCATTGCTGGCAATGATGATATCCGTT TCTGATCCTATTTATGCTAACCTCCCAGATTACAAGTCTTGCTAA
AA sequence Show only first row Show all	>Lus10040262 pacid=23173941 polypeptide=Lus10040262 locus=Lus10040262.g ID=Lus10040262.BGIv1.0 annot-version=v1.0 MNGYAPESSRAFVKDVKRIVIKVGTAVVTRGDGRLALGRLGALCEQIKELNYQHFEVIMVTSGAVGLGRQRLRYRKLVNSSFADLQKPPGDLDGKGCAAV GQNSIMALYDTLFSQLDVTSAQILVTDNDFRDKDLRTQLQQTVDSLLNLRVVPIFNENDADSSGIFWDNDSLAALLALELNADLLVLLSDVDGLYSGPPS DPKSKLIHTYIKEVHQGGITFGDKSRVGRGGMTAKVKAAVNAANAGVPVIITSGFALQNIIKVLHGDDIGTLFHRDAHSWVRTKETGARDMAVAARECSR RLQALSSEERNKILLDIADALEANEKVIKVENDADLAAAEQEGLESSLLARLALKPGKARYPCAVALLPIYVFISCDSPDSVTAFWLYDATALLAMMISV SDPIYANLPDYKSC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55610		P5CS2	delta 1-pyrroline-5-carboxylat...		Lus10040262 [exp]	0	1
AT3G55610		P5CS2	delta 1-pyrroline-5-carboxylat...		Lus10004696 [exp]	1.0	0.9613
AT3G55610		P5CS2	delta 1-pyrroline-5-carboxylat...		Lus10040263 [exp]	2.0	0.9170
AT3G55610		P5CS2	delta 1-pyrroline-5-carboxylat...		Lus10004697 [exp]	4.6	0.8031
AT3G05340			Tetratricopeptide repeat (TPR)...		Lus10015183 [exp]	6.0	0.8119
AT1G78980		SRF5	STRUBBELIG-receptor family 5 (...		Lus10037294 [exp]	15.5	0.8057
AT5G54650		ATFH5, Fh5	FORMIN HOMOLOGY 5, formin homo...		Lus10039705 [exp]	20.1	0.8116
AT2G04030		Hsp88.1, AtHsp9...	HEAT SHOCK PROTEIN 88.1, EMBRY...		Lus10036843 [exp]	20.5	0.7858
AT2G28000		Cpn60alpha1, SL...	SCHLEPPERLESS, chaperonin-60al...		Lus10041329 [exp]	20.8	0.8001
AT4G19810		ChiC	class V chitinase, Glycosyl hy...		Lus10017124 [exp]	22.4	0.7898
AT3G55610		P5CS2	delta 1-pyrroline-5-carboxylat...		Lus10040264 [exp]	25.5	0.7584

Compare expression of checked genes

Lus10040262 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.