Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55610 452 / 2e-151 P5CS2 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2) AT2G39800 447 / 8e-151 ATP5CS, P5CS1 delta1-pyrroline-5-carboxylate synthase 1 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040264 [exp] 549 / 0 AT3G55610 486 / 1e-165 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2) Lus10004697 [exp] 545 / 0 AT3G55610 515 / 4e-180 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2) Lus10040262 [exp] 499 / 4e-174 AT3G55610 480 / 3e-166 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2) Lus10001018 [exp] 485 / 1e-169 AT3G55610 556 / 0.0 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2) Lus10004696 [exp] 483 / 5e-167 AT3G55610 492 / 3e-170 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2) Lus10030158 [exp] 484 / 5e-164 AT3G55610 1089 / 0.0 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2) Lus10001016 [exp] 404 / 5e-138 AT3G55610 497 / 7e-173 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2) Lus10001019 [exp] 392 / 1e-132 AT3G55610 519 / 0.0 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2) Lus10005468 [exp] 154 / 3e-43 AT3G55610 170 / 2e-49 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G198400 [exp] 456 / 4e-153 AT2G39800 1054 / 0.0 delta1-pyrroline-5-carboxylate synthase 1 (.1.2.3.4) Potri.008G060200 [exp] 449 / 2e-150 AT2G39800 1009 / 0.0 delta1-pyrroline-5-carboxylate synthase 1 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00696 [flax] [poplar] AA_kinase Amino acid kinase family
Representative CDS sequence Show only first row Show all	>Lus10040263 pacid=23173850 polypeptide=Lus10040263 locus=Lus10040263.g ID=Lus10040263.BGIv1.0 annot-version=v1.0 ATGGAAGATCCAGTTGGCCATGTATTGAAGAAAACTGAACTTGCAGATGGTCTTGTGTTAGAAAAGACATCTTCTCCTCTAGGTGTTCTACTGATTGTGT TTGAGGCTCGGCCTGATGCACTAGTGCAGATAGCTTCATTGGCGATACGCAGTGGAAACGGTCTCTTACTGAAAGGGGGGAAGGAGGCCAAGCGATCGAA TGCAATTTTGCATAAGGTAATCACTGATGCTATTCCAAACAATGTTGGGAGAAAGCTTATTGGACTGGTGACCTCAAGAGAAGAAATTCCTAACCTGCTT AAGCTTGATGATGTGATCGATCTTGTGATTCCTAGAGGCAGCAACAAGCTGGTTTCCACTATCAAAGCATCAACCAAAATCCCTGTTCTGGGTCACGCTG ATGGAATTTGTCATATATATGTCGACAAGTCTGCTAAAATGGACACGGCCAAGCGTATTGTGGTAGATGCGAAAGTGGACTATCCAGCAGCCTGTAATGC AATGGAAACTCTTCTGGTGCATAAGGATTTGCTTCCCACTCGTGCTCTGAATGAGCTAATAGTCGATCTTGGAAGTGAAGGTGTGATTGTATATGGCGGG CCAAGGGCAAGCAAGGAGCTGAACATTCCGGAGACAGCATCGTTCCATCACGATGCACATACTGATTGCATCATTGCAGAAGACCCTGAAGTAGCAGAGA CTTTTTTACGACAAGTTGACAGTGCTGCTGTTTTCCACAATGCAAGTACAAGATTCTGCGATGGAGCAAGATTCGGACTTGGTGCAGAGGTGGGAATCAG TACAAGTAGAATCCACGCTCGAGGCCCCGTAGGAGTCGAAGGATTGTTGACAACCCGATGCTTTGCTGATCTCCAGAAGCCACCGGGTGATCTGGACGGG AAGGGGTGTGCTGCTGTTGGACAGAACAGTATCATGGCCCTTTATGACACCTTGTTCAGTCAGCTGGATGTGACTTCTGCTCAGATTCTCGTGACTGATA ATGATTTTAGGGATAAAGATCTCAGGACTCAACTTCAGCAGACTGTTGACTCGCTGCTCAACCTCAGGGTTGTCCCCATTTTCAACGAGAATGATGCAGA TTCCTCTGGCATCTTCTGGGACAATGACAGCTTGGCTGCCTTGCTTGCATTGGAGTTGAACGCTGATCTTCTTGTTCTGCTGAGTGACGTGGACGGTCTT TACAGCGGTCCACCAAGTGATCCAAAGTCAAAGTTGATTCATACATACATTAAGGAAGTGCATCAAGGTGGAATCACGTTTGGAGACAAGTCTAGGGTGG GAAGAGGCGGAATGACAGCAAAAGTTAAGGCTGCTGTCAATGCTGCTAATGCAGGTGTTCCTGTTATCATAACCAGCGGATTTGCTCTCCAGAACATAAT TAAAGTCCTCCATGGAGATGATATTGGCACTCTCTTTCACCGGGATGCTCACTCGTGGGTCAGAACGAAAGAAACGGGAGCCCGTGACATGGCTGTTGCA GCAAGGGAGTGTTCTAGACGTCTGCAGGCACTATCCTCAGAAGAGAGGAACAAGATATTGCTGGATATAGCAGATGCCCTCGAAGCCAATGAAAAAGTAA TTAAGGTTGAGAATGATGCAGACCTTGCTGCTGCTGAGCAGGAAGGACTAGAAAGCTCCTTGTTAGCACGGTTGGCACTGAAGCCCGGGAAGGCAAGATA CCCTGGTGCTGTTGCTCTGTTATGTCTTTATTTCTTGTGA
AA sequence Show only first row Show all	>Lus10040263 pacid=23173850 polypeptide=Lus10040263 locus=Lus10040263.g ID=Lus10040263.BGIv1.0 annot-version=v1.0 MEDPVGHVLKKTELADGLVLEKTSSPLGVLLIVFEARPDALVQIASLAIRSGNGLLLKGGKEAKRSNAILHKVITDAIPNNVGRKLIGLVTSREEIPNLL KLDDVIDLVIPRGSNKLVSTIKASTKIPVLGHADGICHIYVDKSAKMDTAKRIVVDAKVDYPAACNAMETLLVHKDLLPTRALNELIVDLGSEGVIVYGG PRASKELNIPETASFHHDAHTDCIIAEDPEVAETFLRQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRCFADLQKPPGDLDG KGCAAVGQNSIMALYDTLFSQLDVTSAQILVTDNDFRDKDLRTQLQQTVDSLLNLRVVPIFNENDADSSGIFWDNDSLAALLALELNADLLVLLSDVDGL YSGPPSDPKSKLIHTYIKEVHQGGITFGDKSRVGRGGMTAKVKAAVNAANAGVPVIITSGFALQNIIKVLHGDDIGTLFHRDAHSWVRTKETGARDMAVA ARECSRRLQALSSEERNKILLDIADALEANEKVIKVENDADLAAAEQEGLESSLLARLALKPGKARYPGAVALLCLYFL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55610		P5CS2	delta 1-pyrroline-5-carboxylat...		Lus10040263 [exp]	0	1
AT3G55610		P5CS2	delta 1-pyrroline-5-carboxylat...		Lus10004697 [exp]	1.0	0.9572
AT3G55610		P5CS2	delta 1-pyrroline-5-carboxylat...		Lus10040262 [exp]	2.0	0.9170
AT3G55610		P5CS2	delta 1-pyrroline-5-carboxylat...		Lus10004696 [exp]	2.4	0.8792
AT3G55610		P5CS2	delta 1-pyrroline-5-carboxylat...		Lus10040264 [exp]	6.0	0.7712
AT5G46100			Pentatricopeptide repeat (PPR)...		Lus10015397 [exp]	8.5	0.6596
AT2G16430		ATPAP10, PAP10	purple acid phosphatase 10 (.1...		Lus10028799 [exp]	13.6	0.7031
AT1G72520		ATLOX4, LOX4	Arabidopsis thaliana lipoxygen...		Lus10027379 [exp]	15.3	0.6498
AT1G80480		PTAC17	plastid transcriptionally acti...		Lus10025665 [exp]	22.1	0.7256
					Lus10007677 [exp]	25.7	0.6880
AT1G50270			Pentatricopeptide repeat (PPR)...		Lus10023251 [exp]	34.0	0.6946

Compare expression of checked genes

Lus10040263 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.