Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55610 456 / 8e-154 P5CS2 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2) AT2G39800 451 / 3e-153 ATP5CS, P5CS1 delta1-pyrroline-5-carboxylate synthase 1 (.1.2.3.4) AT3G53850 195 / 3e-60 Uncharacterised protein family (UPF0497) (.1) AT5G02060 177 / 4e-53 Uncharacterised protein family (UPF0497) (.1) AT3G23200 162 / 2e-47 Uncharacterised protein family (UPF0497) (.1) AT2G28370 116 / 3e-30 Uncharacterised protein family (UPF0497) (.1) AT2G37200 91 / 3e-21 Uncharacterised protein family (UPF0497) (.1) AT3G50810 69 / 1e-13 Uncharacterised protein family (UPF0497) (.1) AT1G49405 67 / 3e-13 Uncharacterised protein family (UPF0497) (.1) AT4G37235 63 / 1e-11 Uncharacterised protein family (UPF0497) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040263 [exp] 548 / 0 AT3G55610 481 / 1e-162 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2) Lus10004697 [exp] 548 / 0 AT3G55610 515 / 4e-180 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2) Lus10001018 [exp] 489 / 3e-172 AT3G55610 556 / 0.0 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2) Lus10030158 [exp] 487 / 5e-166 AT3G55610 1089 / 0.0 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2) Lus10001016 [exp] 406 / 6e-140 AT3G55610 497 / 7e-173 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2) Lus10004698 [exp] 282 / 7e-94 AT3G53850 213 / 6e-72 Uncharacterised protein family (UPF0497) (.1) Lus10005468 [exp] 152 / 6e-43 AT3G55610 170 / 2e-49 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2) Lus10010881 [exp] 140 / 2e-39 AT3G53850 143 / 2e-44 Uncharacterised protein family (UPF0497) (.1) Lus10024355 [exp] 138 / 4e-39 AT3G53850 147 / 7e-47 Uncharacterised protein family (UPF0497) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G198400 [exp] 463 / 1e-156 AT2G39800 1054 / 0.0 delta1-pyrroline-5-carboxylate synthase 1 (.1.2.3.4) Potri.008G060200 [exp] 455 / 2e-153 AT2G39800 1009 / 0.0 delta1-pyrroline-5-carboxylate synthase 1 (.1.2.3.4) Potri.010G198700 [exp] 244 / 6e-79 AT3G53850 206 / 5e-69 Uncharacterised protein family (UPF0497) (.1) Potri.006G090400 [exp] 204 / 2e-63 AT3G53850 193 / 5e-64 Uncharacterised protein family (UPF0497) (.1) Potri.008G165500 [exp] 144 / 1e-40 AT3G23200 174 / 1e-56 Uncharacterised protein family (UPF0497) (.1) Potri.010G073000 [exp] 140 / 2e-39 AT3G23200 182 / 7e-60 Uncharacterised protein family (UPF0497) (.1) Potri.009G014600 [exp] 112 / 1e-28 AT2G28370 256 / 2e-88 Uncharacterised protein family (UPF0497) (.1) Potri.004G211400 [exp] 108 / 2e-27 AT2G28370 221 / 2e-74 Uncharacterised protein family (UPF0497) (.1) Potri.016G090100 [exp] 103 / 2e-25 AT2G28370 216 / 3e-72 Uncharacterised protein family (UPF0497) (.1) Potri.009G110200 [exp] 98 / 6e-24 AT3G50810 165 / 5e-53 Uncharacterised protein family (UPF0497) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0396 [flax] [poplar] Marvel-like PF04535 [flax] [poplar] DUF588 Domain of unknown function (DUF588)
Representative CDS sequence Show only first row Show all	>Lus10040264 pacid=23173869 polypeptide=Lus10040264 locus=Lus10040264.g ID=Lus10040264.BGIv1.0 annot-version=v1.0 ATGGAAGATCCAGTCGGCCATGTATTGAAGAAAACTGAACTTGCAGATGGTCTTGTTTTAGAAAAGACATCTTCTCCTCTAGGTGTTCTCCTGATTGTGT TTGAGGCTCGGCCTGATGCACTAGTGCAGATAGCTTCATTGGCTATACGCAGTGGAAATGGTCTCTTACTGAAAGGGGGGAAGGAGGCCAAGCGATCGAA TGCAATTTTGCATAAGGTAATCACTGATGCTATTCCAAACAATGTTGGGAGAAAGCTTATTGGACTGGTGACCTCAAGAGAAGAAATTCCTGACCTGCTT AAGCTTGATGATGTGATCGATCTTGTGATTCCTAGAGGCAGCAATAAGCTGGTTTCCACTATCAAAGCATCAACCAAAATCCCTGTTCTGGGTCACGCAG ATGGAATTTGTCATATATATGTCGACAAGTCTGCTAAAATGGACATGGCGAAGCGTATTGTGATAGATGCGAAAGTGGATTATCCAGCTGCCTGTAATGC AATGGAAACTCTTCTGGTGCATAAGGATTTGCTTCCCACTCGTGCTCTAAATGAGCTAATAGTTGATCTTGGAAGTGAAGGTGTGATTGTATATGGCGGG CCAAGGGCAAGCAAGGAGCTGAACATTCCGGAGACAGCATCGTTCCATCACGATGCACATACTGACTGCATCATTGCAGAAGACCCTGAAGTAGCAGAGA CCTTTTTACGACAAGTTGACAGTGCTGCTGTTTTCCACAATGCAAGTACAAGATTCTGCGATGGAGCAAGATTTGGACTTGGAGCAGAGGTGGGAATCAG TACAAGTAGAATCCACGCTCGAGGCCCCGTAGGAGTCGAAGGATTGTTGACAACCCGATGGTACATTTTCTGCCAGACTCCCTTCATCGAGTTCTCTCTA TTGTTCGTACTGCTACTGATATATGATAATAAGATGTGTCTTTTACTTCAATTCTGCAAGCTCTCAATTGCAATTCTTGTCTGCATAAGAAACTCAGCTG AACTCGAACGAGATTCCGCTCTTCTTGGAAAAGGCGACGACCAATGGGAGGCTAGATTGAGCTGGTCTTTCGGTATCATCTTCATCGTTGATTTGTTTGG GAGTCCAGGGCGGGTGAGTGGGTTAGGATTGAGGGTAGGGCAATTTGTGTTTGCAGCTGCTTCGATTGGAGTTATGGTTTCTGCTCATGGCTTCTTCAAC TCTACTGCTTTCTGCTATTTGATTGCATCGATGGGCCTTCAAGTGCTTTGGAGTTTCGGACTTGCATGCCTCGACCTCCATGCATTGAGACTAAAGAGAA GCCTGCAGAATCCCGTCTTAGTGAGCCTATTTGTTGTTGGCGATTGGGTGACATCAATCCTCTCACTTGCAGCTGCATCTGCATCAGCAGGAGTTATAGT TTTGTACGCTAGAGACCTGCATTACTGCAAGTCCGATACTCATTTCCCGTGCCAGAAGTTCCAAATCTCCATTAGTTTGGCTTTCATCTCATGGTTTCTC GTTGCAGTTTCATCCCATGTCATGTTCTGGCTCATGGCCTCACTATGA
AA sequence Show only first row Show all	>Lus10040264 pacid=23173869 polypeptide=Lus10040264 locus=Lus10040264.g ID=Lus10040264.BGIv1.0 annot-version=v1.0 MEDPVGHVLKKTELADGLVLEKTSSPLGVLLIVFEARPDALVQIASLAIRSGNGLLLKGGKEAKRSNAILHKVITDAIPNNVGRKLIGLVTSREEIPDLL KLDDVIDLVIPRGSNKLVSTIKASTKIPVLGHADGICHIYVDKSAKMDMAKRIVIDAKVDYPAACNAMETLLVHKDLLPTRALNELIVDLGSEGVIVYGG PRASKELNIPETASFHHDAHTDCIIAEDPEVAETFLRQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWYIFCQTPFIEFSL LFVLLLIYDNKMCLLLQFCKLSIAILVCIRNSAELERDSALLGKGDDQWEARLSWSFGIIFIVDLFGSPGRVSGLGLRVGQFVFAAASIGVMVSAHGFFN STAFCYLIASMGLQVLWSFGLACLDLHALRLKRSLQNPVLVSLFVVGDWVTSILSLAAASASAGVIVLYARDLHYCKSDTHFPCQKFQISISLAFISWFL VAVSSHVMFWLMASL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55610		P5CS2	delta 1-pyrroline-5-carboxylat...		Lus10040264 [exp]	0	1
AT3G55610		P5CS2	delta 1-pyrroline-5-carboxylat...		Lus10040263 [exp]	6.0	0.7712
AT2G13610		ABCG5	ATP-binding cassette G5, ABC-2...		Lus10029905 [exp]	8.0	0.7868
AT2G04030		Hsp88.1, AtHsp9...	HEAT SHOCK PROTEIN 88.1, EMBRY...		Lus10019206 [exp]	9.9	0.7795
AT3G13470		Cpn60beta2	chaperonin-60beta2, TCP-1/cpn6...		Lus10010321 [exp]	10.3	0.7914
AT1G48100			Pectin lyase-like superfamily ...		Lus10017109 [exp]	25.2	0.7791
AT3G55610		P5CS2	delta 1-pyrroline-5-carboxylat...		Lus10040262 [exp]	25.5	0.7584
AT1G72520		ATLOX4, LOX4	Arabidopsis thaliana lipoxygen...		Lus10027379 [exp]	34.6	0.6630
AT1G25360			Pentatricopeptide repeat (PPR)...		Lus10028106 [exp]	45.4	0.7678
AT4G33760			tRNA synthetase class II (D, K...		Lus10035657 [exp]	54.1	0.7665
AT2G20390			unknown protein		Lus10024957 [exp]	72.1	0.7078

Compare expression of checked genes

Lus10040264 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.