Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39750 945 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G06050 924 / 0 Putative methyltransferase family protein (.1) AT1G77260 829 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G14360 484 / 2e-164 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT3G51070 488 / 2e-162 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G04430 478 / 5e-162 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT1G29470 481 / 2e-161 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT5G64030 482 / 6e-161 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G34300 480 / 6e-161 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT3G23300 473 / 2e-160 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004702 [exp] 1189 / 0 AT2G39750 1021 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10030155 [exp] 1083 / 0 AT2G39750 1049 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10001013 [exp] 1080 / 0 AT2G39750 1053 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10042762 [exp] 613 / 0 AT1G77260 741 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10029731 [exp] 612 / 0 AT1G77260 732 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10028656 [exp] 596 / 0 AT1G77260 744 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10000973 [exp] 550 / 0 AT1G77260 652 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10018954 [exp] 485 / 8e-163 AT1G29470 1047 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10020894 [exp] 481 / 4e-161 AT5G64030 1019 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G059500 [exp] 998 / 0 AT2G39750 1040 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.010G199300 [exp] 955 / 0 AT2G39750 998 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G077100 [exp] 806 / 0 AT1G77260 907 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G118100 [exp] 496 / 5e-165 AT3G51070 990 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.010G185000 [exp] 482 / 2e-163 AT2G40280 810 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G184500 [exp] 481 / 1e-160 AT1G29470 1050 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.002G075800 [exp] 477 / 4e-159 AT1G29470 1048 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.002G036800 [exp] 469 / 1e-158 AT1G04430 989 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.005G226000 [exp] 467 / 7e-158 AT1G04430 939 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.005G065200 [exp] 474 / 1e-157 AT5G64030 1078 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03141 [flax] [poplar] Methyltransf_29 Putative S-adenosyl-L-methionine-dependent methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10040268 pacid=23174181 polypeptide=Lus10040268 locus=Lus10040268.g ID=Lus10040268.BGIv1.0 annot-version=v1.0 ATGAAATCGTCGGATATCGTGAAGACGCCACTCGCTCTCAAGATCGCCGGATTCACTCTGATAACACTCTCCTTTTTCTACTTGGGCAAGCACTGGAGCT CCAATGGAAGCTTCCAGCAGCTCGTTTTCTTCTCTTCTTCACCAGCAACAGCCTCTGTCGGTGTATCTCCGAACCAGAGGAAGCCGTTTAATGTCACTGC TTTGATCAGCCAAACCGACACGGTATCGGAACCCCGACCTCCCCATATTCCTGCCAGTGCTTCGGCGGGGGAATCGGATAAGAGGTTTGGGGTTGTTGAT GGGGATGGGAAGATGAGCGATGAATTTGAAGTCGGGGAGGTAGTAGATCCGGAAGTTGTGGAGAATTGGGGGAATGAGACGGGGATTGAAACTGAAGGTG GTAAGGAATCTAGAGTTAGGATCAAAAGATTCCAGCTGTGTGATGAGAGCATGAGAGAGCATATTCCTTGTTTGGACAATGTCGAGACGATCAAGCGATT GAAATCGACGGAGAAAGGGGAGAGATTCGAGAGGCATTGCCCTGCCAGAGGAAAAGGTTTGAATTGTTTGGTTCCGCCGCCTAATGGATATCGGCAACCA ATCCCATGGCCACGGAGTCGTGATGAGGTGTGGTTTTCGAATGTACCCCATACTCGTTTGGTTGAAGACAAAGGAGGTCAGAACTGGATTTCCAAAGACA ACGACAAGTTCAAGTTCCCTGGTGGTGGGACACAGTTCATCCATGGCGCAGATCAATACCTGGATCAGATTTCTAAGATGGTCCCTGATATTGCTTTTGG TAACCGGACAAGGGTAGTTCTGGACGTTGGATGTGGTGTAGCCAGTTTCGGTGCGTATCTACTATCACGGGACGTCTTACCTTTGTCAATAGCTCCCAAA GACGTTCATGAGAACCAGATTCAGTTTGCTCTCGAACGTGGTGTCCCTGCTATGGTGGCTGCATTTGCCACTCATCGGTTGATGTATCCAAGTCAGGCAT TTGAAATAATCCATTGCTCAAGATGTAGAATCAACTGGACTCGTGATGATGGAATATTGCTACTTGAGGTCAACAGGATAATGCGAGCTGGAGGATACTT TGCTTGGGCAGCCCAGCCGGTCTACAAGCACGAGCCGGCACTGGAGGAACAGTGGGAAGAGATGCTTAACCTCACAACTCGACTTTGCTGGGAACTCGTT AAGAAAGAGGGGTACATCGCAATCTGGCAGAAACCCAAGAACAACAGCTGCTACTTACGCCGAGATGTTGGAATCGGTCCTCCATTGTGTGAACCAGATG ACGATCCTGATAATATTTGGTACGCTGATTTGAAAGCATGCATTACTCGAATCCCCGAGAACGGATATGGAGCAAATCTCACTGCATGGCCTGCTCGTCT ACATACCCCTCCTGATAGACTTCAGAGTATACAAATGGATGCTTACATCTCCAGGAAAGAGCTTTTCAATGCTGAATCGAAATATTGGTCTGAAATTATA GCCGGCTATGTCCGTGCCTGGCATTGGAAGCAGCTTAAACTTAGAAACGTCCTGGATATGAAAGCTGGTTTTGGAGGATTTTCTGCTGCTCTAATTGATC AGGGATTCAATAGCTGGGTTCTAAATGTAGTTCCCGTTAGTGGGCCAAACACGCTTCCTGTCATATATGATCGTGGACTGATTGGAGTCATGCATGATTG GTGTGAGCCGTTTGATACATATCCAAGAACCTATGATCTATTGCATGCTTCTGGGCTTTTTACTGTTGAAAGGAAAAGGTGTAACATGTCGACAATTATG ATCGAGATGGATCGGATACTCAGACCTGGCGGTCGAGCATACATCCGTGATACCCTTAACGTCATGGAGAGCATACATCCGTGA
AA sequence Show only first row Show all	>Lus10040268 pacid=23174181 polypeptide=Lus10040268 locus=Lus10040268.g ID=Lus10040268.BGIv1.0 annot-version=v1.0 MKSSDIVKTPLALKIAGFTLITLSFFYLGKHWSSNGSFQQLVFFSSSPATASVGVSPNQRKPFNVTALISQTDTVSEPRPPHIPASASAGESDKRFGVVD GDGKMSDEFEVGEVVDPEVVENWGNETGIETEGGKESRVRIKRFQLCDESMREHIPCLDNVETIKRLKSTEKGERFERHCPARGKGLNCLVPPPNGYRQP IPWPRSRDEVWFSNVPHTRLVEDKGGQNWISKDNDKFKFPGGGTQFIHGADQYLDQISKMVPDIAFGNRTRVVLDVGCGVASFGAYLLSRDVLPLSIAPK DVHENQIQFALERGVPAMVAAFATHRLMYPSQAFEIIHCSRCRINWTRDDGILLLEVNRIMRAGGYFAWAAQPVYKHEPALEEQWEEMLNLTTRLCWELV KKEGYIAIWQKPKNNSCYLRRDVGIGPPLCEPDDDPDNIWYADLKACITRIPENGYGANLTAWPARLHTPPDRLQSIQMDAYISRKELFNAESKYWSEII AGYVRAWHWKQLKLRNVLDMKAGFGGFSAALIDQGFNSWVLNVVPVSGPNTLPVIYDRGLIGVMHDWCEPFDTYPRTYDLLHASGLFTVERKRCNMSTIM IEMDRILRPGGRAYIRDTLNVMESIHP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39750			S-adenosyl-L-methionine-depend...		Lus10040268 [exp]	0	1
AT1G52360			Coatomer, beta' subunit (.1.2)		Lus10011467 [exp]	1.7	0.9433
AT4G34450			coatomer gamma-2 subunit, puta...		Lus10026336 [exp]	2.0	0.9424
AT3G03250		AtUGP1, UGP1, U...	UDP-GLUCOSE PYROPHOSPHORYLASE ...		Lus10031365 [exp]	2.6	0.9098
AT5G51430		EYE	EMBRYO YELLOW, conserved oligo...		Lus10031155 [exp]	2.8	0.9082
AT4G31590		ATCSLC5, ATCSLC...	CELLULOSE-SYNTHASE LIKE C5, Ce...		Lus10026923 [exp]	3.9	0.9173
AT3G05420		ACBP4	acyl-CoA binding protein 4 (.1...		Lus10031497 [exp]	4.6	0.9208
AT1G50120			unknown protein		Lus10040977 [exp]	4.9	0.9202
AT3G05420		ACBP4	acyl-CoA binding protein 4 (.1...		Lus10015176 [exp]	7.3	0.9076
AT1G10950		AtTMN1	transmembrane nine 1 (.1)		Lus10001291 [exp]	7.7	0.9137
AT2G38650		GAUT7, LGT7	LIKE GLYCOSYL TRANSFERASE 7, g...		Lus10003235 [exp]	8.4	0.8954

Compare expression of checked genes

Lus10040268 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.